Chromatin diminution in Copepoda (Crustacea): pattern, biological role and evolutionary aspects

Andrey Grishanin

doi:10.3897/compcytogen.v8i1.5913

Vladimir A. Timoshevskiy, Nataliya Y. Timoshevskaya, Jeramiah J. Smith (2019)
Germline-Specific Repetitive Elements in Programmatically Eliminated Chromosomes of the Sea Lamprey (Petromyzon marinus). Genes 10: 832.

DOI: 10.3390/genes10100832

Chang-Bum Jeong, Bo-Young Lee, Beom-Soon Choi, Min-Sub Kim, Jun Chul Park, Duck-Hyun Kim, Minghua Wang, Heum Gi Park, Jae-Seong Lee (2020)
The genome of the harpacticoid copepod Tigriopus japonicus: Potential for its use in marine molecular ecotoxicology. Aquatic Toxicology 222: 105462.

DOI: 10.1016/j.aquatox.2020.105462

V. I. Teterina, Yu. A. Galimova, N. G. Sheveleva, L. V. Sukhanova, T. Yu. Mayor, A. N. Zaitseva, S. V. Kirilchik (2016)
A simple and effective method for assessing chromatin diminution values in copepods using qPCR. Russian Journal of Genetics 52: 1200.

DOI: 10.1134/S1022795416110168

Brandon Estrem, Richard E Davis, Jianbin Wang (2024)
End resection and telomere healing of DNA double-strand breaks during nematode programmed DNA elimination. Nucleic Acids Research 52: 8913.

DOI: 10.1093/nar/gkae579

Carine Rey, Caroline Launay, Eva Wenger, Marie Delattre (2023)
Programmed DNA elimination in Mesorhabditis nematodes. Current Biology 33: 3711.

DOI: 10.1016/j.cub.2023.07.058

Julio B.J. Harvey, Shannon B. Johnson, Jennifer L. Fisher, William T. Peterson, Robert C. Vrijenhoek (2017)
Comparison of morphological and next generation DNA sequencing methods for assessing zooplankton assemblages. Journal of Experimental Marine Biology and Ecology 487: 113.

DOI: 10.1016/j.jembe.2016.12.002

Jianbin Wang, Richard E Davis (2014)
Programmed DNA elimination in multicellular organisms. Current Opinion in Genetics & Development 27: 26.

DOI: 10.1016/j.gde.2014.03.012

Maxim V. Zagoskin, Jianbin Wang (2021)
Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells. Biochemical Society Transactions 49: 1891.

DOI: 10.1042/BST20190951

Jianbin Wang, Giovana M.B. Veronezi, Yuanyuan Kang, Maxim Zagoskin, Eileen T. O’Toole, Richard E. Davis (2020)
Comprehensive Chromosome End Remodeling during Programmed DNA Elimination. Current Biology 30: 3397.

DOI: 10.1016/j.cub.2020.06.058

Dmitrij Dedukh, Alla Krasikova (2022)
Delete and survive: strategies of programmed genetic material elimination in eukaryotes. Biological Reviews 97: 195.

DOI: 10.1111/brv.12796

Lara Covelo-Soto, Paloma Morán, Juan J. Pasantes, Concepción Pérez-García (2014)
Cytogenetic evidences of genome rearrangement and differential epigenetic chromatin modification in the sea lamprey (Petromyzon marinus). Genetica 142: 545.

DOI: 10.1007/s10709-014-9802-5

Olga Shubernetskaya, Dmitry Skvortsov, Sergey Evfratov, Maria Rubtsova, Elena Belova, Olga Strelkova, Varvara Cherepaninets, Oxana Zhironkina, Alexey Olovnikov, Maria Zvereva, Olga Dontsova, Igor Kireev (2017)
Interstitial telomeric repeats-associated DNA breaks. Nucleus 8: 641.

DOI: 10.1080/19491034.2017.1356501

Mohammed‐Amin Madoui, Julie Poulain, Kevin Sugier, Marc Wessner, Benjamin Noel, Leo Berline, Karine Labadie, Astrid Cornils, Leocadio Blanco‐Bercial, Lars Stemmann, Jean‐Louis Jamet, Patrick Wincker (2017)
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona. Molecular Ecology 26: 4467.

DOI: 10.1111/mec.14214

Zhenyong Du, Gregory Gelembiuk, Wynne Moss, Andrew Tritt, Carol Eunmi Lee, Yu Jiang (2024)
The Genome Architecture of the Copepod Eurytemora carolleeae — the Highly Invasive Atlantic Clade of the Eurytemora affinis Species Complex. Genomics, Proteomics & Bioinformatics 22: .

DOI: 10.1093/gpbjnl/qzae066

Bjørn Henrik Hansen, Ann M. Tarrant, Petra H. Lenz, Vittoria Roncalli, Rodrigo Almeda, Ole Jacob Broch, Dag Altin, Knut Erik Tollefsen (2024)
Effects of petrogenic pollutants on North Atlantic and Arctic Calanus copepods: From molecular mechanisms to population impacts. Aquatic Toxicology 267: 106825.

DOI: 10.1016/j.aquatox.2023.106825

Andrey Grishanin (2024)
Chromatin diminution as a tool to study some biological problems. Comparative Cytogenetics 18: 27.

DOI: 10.3897/compcytogen.17.112152

Ann M. Tarrant, Birgitte Nilsson, Benni Winding Hansen (2019)
Molecular physiology of copepods - from biomarkers to transcriptomes and back again. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 30: 230.

DOI: 10.1016/j.cbd.2019.03.005

Guo-Hua Qiu, Cuiqin Huang, Xintian Zheng, Xiaoyan Yang (2018)
The Protective Function of Noncoding DNA in Genome Defense of Eukaryotic Male Germ Cells. Epigenomics 10: 499.

DOI: 10.2217/epi-2017-0103

Luciana F Santoferrara (2019)
Current practice in plankton metabarcoding: optimization and error management. Journal of Plankton Research 41: 571.

DOI: 10.1093/plankt/fbz041

Andrey K. Grishanin, Maxim V. Zagoskin (2018)
Chromatin Diminution in Cyclops kolensis Lill. (Copepoda, Crustacea) as a Radical Way to Inactivate Redundant Genome in Somatic Cells. Cytogenetic and Genome Research 156: 165.

DOI: 10.1159/000494157

Vladimir A. Timoshevskiy, Joseph R. Herdy, Melissa C. Keinath, Jeramiah J. Smith, Lucia Carbone (2016)
Cellular and Molecular Features of Developmentally Programmed Genome Rearrangement in a Vertebrate (Sea Lamprey: Petromyzon marinus). PLOS Genetics 12: e1006103.

DOI: 10.1371/journal.pgen.1006103

Jianbin Wang, Shenghan Gao, Yulia Mostovoy, Yuanyuan Kang, Maxim Zagoskin, Yongqiao Sun, Bing Zhang, Laura K. White, Alice Easton, Thomas B. Nutman, Pui-Yan Kwok, Songnian Hu, Martin K. Nielsen, Richard E. Davis (2017)
Comparative genome analysis of programmed DNA elimination in nematodes. Genome Research 27: 2001.

DOI: 10.1101/gr.225730.117

Leszek A. Błędzki, Jan Igor Rybak (2016)
Freshwater Crustacean Zooplankton of Europe. Chapter 17: 475.

DOI: 10.1007/978-3-319-29871-9_17

Adrian Streit, Richard E Davis (2016)
Encyclopedia of Life Sciences. : 1.

DOI: 10.1002/9780470015902.a0001181.pub2

Leszek A. Błędzki, Jan Igor Rybak (2016)
Freshwater Crustacean Zooplankton of Europe. Chapter 16: 453.

DOI: 10.1007/978-3-319-29871-9_16