Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat

Ilya Kirov; Marina Gilyok; Andrey Knyazev; Igor Fesenko

doi:10.3897/CompCytogen.v12i4.31015

Tony Heitkam, Luise Schulte, Beatrice Weber, Susan Liedtke, Sarah Breitenbach, Anja Kögler, Kristin Morgenstern, Marie Brückner, Ute Tröber, Heino Wolf, Doris Krabel, Thomas Schmidt (2021)
Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs. Frontiers in Genetics 12: .

DOI: 10.3389/fgene.2021.683668

Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Sang-Ho Kang, Hyun Hee Kim (2021)
Chromosomal Mapping of Tandem Repeats Revealed Massive Chromosomal Rearrangements and Insights Into Senna tora Dysploidy. Frontiers in Plant Science 12: .

DOI: 10.3389/fpls.2021.629898

Zhen Huang, Ivanete De O. Furo, Jing Liu, Valentina Peona, Anderson J. B. Gomes, Wan Cen, Hao Huang, Yanding Zhang, Duo Chen, Ting Xue, Qiujin Zhang, Zhicao Yue, Quanxi Wang, Lingyu Yu, Youling Chen, Alexander Suh, Edivaldo H. C. de Oliveira, Luohao Xu (2022)
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications 13: .

DOI: 10.1038/s41467-022-28585-1

Mariela Sader, Magdalena Vaio, Luiz Augusto Cauz-Santos, Marcelo Carnier Dornelas, Maria Lucia Carneiro Vieira, Natoniel Melo, Andrea Pedrosa-Harand (2021)
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome. Planta 253: .

DOI: 10.1007/s00425-021-03598-0

Haoran Luo, Xinrui Jiang, Boping Li, Jiahong Wu, Jiexin Shen, Zaoxu Xu, Xiaoping Zhou, Minghao Hou, Zhen Huang, Xiaobin Ou, Luohao Xu (2023)
A high-quality genome assembly highlights the evolutionary history of the great bustard (Otis tarda, Otidiformes). Communications Biology 6: .

DOI: 10.1038/s42003-023-05137-x

Vera Hemleben, Donald Grierson, Nikolai Borisjuk, Roman A. Volkov, Ales Kovarik (2021)
Personal Perspectives on Plant Ribosomal RNA Genes Research: From Precursor-rRNA to Molecular Evolution. Frontiers in Plant Science 12: .

DOI: 10.3389/fpls.2021.797348

Osamah Alisawi, Katja R. Richert-Pöggeler, J.S. (Pat) Heslop-Harrison, Trude Schwarzacher (2023)
The nature and organization of satellite DNAs in Petunia hybrida, related, and ancestral genomes. Frontiers in Plant Science 14: .

DOI: 10.3389/fpls.2023.1232588

Lingzhan Xue, Yu Gao, Meiying Wu, Tian Tian, Haiping Fan, Yongji Huang, Zhen Huang, Dapeng Li, Luohao Xu (2021)
Telomere-to-telomere assembly of a fish Y chromosome reveals the origin of a young sex chromosome pair. Genome Biology 22: .

DOI: 10.1186/s13059-021-02430-y

Lifeng Wang, Xuepeng Sun, Yajun Peng, Ke Chen, Shan Wu, Yanan Guo, Jingyuan Zhang, Haona Yang, Tao Jin, Lamei Wu, Xiaomao Zhou, Bin Liang, Zhenghong Zhao, Ducai Liu, Zhangjun Fei, Lianyang Bai (2022)
Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields. Molecular Plant 15: 1045.

DOI: 10.1016/j.molp.2022.05.001

Wenjing Tao, Luohao Xu, Lin Zhao, Zexian Zhu, Xin Wu, Qianwen Min, Deshou Wang, Qi Zhou (2021)
High‐quality chromosome‐level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes. Molecular Ecology Resources 21: 543.

DOI: 10.1111/1755-0998.13273

Pavel Kroupin, Victoria Kuznetsova, Dmitry Romanov, Alina Kocheshkova, Gennady Karlov, Thi Xuan Dang, Thi Mai L. Khuat, Ilya Kirov, Oleg Alexandrov, Alexander Polkhovskiy, Olga Razumova, Mikhail Divashuk (2019)
Pipeline for the Rapid Development of Cytogenetic Markers Using Genomic Data of Related Species. Genes 10: 113.

DOI: 10.3390/genes10020113

Ilya Kirov, Elizaveta Kolganova, Maxim Dudnikov, Olga Yu. Yurkevich, Alexandra V. Amosova, Olga V. Muravenko (2022)
A Pipeline NanoTRF as a New Tool for De Novo Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes. Plants 11: 2103.

DOI: 10.3390/plants11162103

Roman Matyášek, Alice Krumpolcová, Jana Lunerová, Eva Mikulášková, Josep A. Rosselló, Aleš Kovařík (2019)
Unique Epigenetic Features of Ribosomal RNA Genes (rDNA) in Early Diverging Plants (Bryophytes). Frontiers in Plant Science 10: .

DOI: 10.3389/fpls.2019.01066