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Research Article
Contributions to the cytogenetics of the Neotropical fish fauna
expand article infoLuis Antônio Carlos Bertollo‡, Marcelo de Bello Cioffi§, Pedro Manoel Galetti Jr§, Orlando Moreira-Filho§
‡ Universidade Federal de São Carlos, São Carlos, Brazil
§ Universidade Federal do São Carlos, São Carlos, Brazil

Corresponding author: Luis Antônio Carlos Bertollo ( bertollo@ufscar.br )

Academic editor: Petr Rab
© 2017 Luis Antônio Carlos Bertollo, Marcelo de Bello Cioffi, Pedro Manoel Galetti Jr, Orlando Moreira-Filho.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation: Bertollo L, Cioffi M, Galetti Jr P, Moreira-Filho O (2017) Contributions to the cytogenetics of the Neotropical fish fauna. Comparative Cytogenetics 11(4): 665-690. https://doi.org/10.3897/compcytogen.v11i4.14713
ZooBank: urn:lsid:zoobank.org:pub:52554437-0D6C-4BB5-8AFA-6A6AAA187D53
Open Access

Abstract

Brazilian fish cytogenetics started as early as the seventies in three pioneering research groups, located at the Universidade Estadual Paulista (UNESP, Botucatu, SP), Universidade Federal de São Carlos (UFSCar, São Carlos, SP) and Universidade de São Paulo (USP, São Paulo, SP). Investigations that have been conducted in these groups led to the discovery of a huge chromosomal and genomic biodiversity among Neotropical fishes. Besides, they also provided the expansion of this research area, with the genesis of several other South American research groups, in view of a number of dissertations and doctoral theses developed over years. The current authors were encouraged to make their thesis catalog accessible from a public source, in order to share informations on the taxa and subject matter analyzed. Some of the key contributions to evolutionary fish cytogenetics are also being highligthed.

Keywords

Fish cytogenetics, Neotropical species, biodiversity, sex chromosomes, B chromosomes

Introduction

About 13,000 freshwater fish species are now recognized, 50% of them living in the Neotropical region (Reis et al. 2003), which emphasizes the significant parcel of the ichthyological diversity enclosed in this particular world region. Of course, this was one of the main reasons that attracted the attention of some Brazilian researchers, fostering the investigation on cytogenetics of Neotropical fishes.

Brazilian fish cytogenetics started in the early 70s, with three pioneering research groups located at the Universidade Estadual Paulista (UNESP, Botucatu, SP), Universidade Federal de São Carlos (UFSCar, São Carlos, SP) and Universidade de São Paulo (USP, São Paulo, SP). During this time, a lot of significant evolutionary and cytotaxonomic contributions were achieved, improving the knowledge on the biodiversity inside the rich Neotropical ichthyofauna.

The development of methodological approaches was certainly a key step for obtaining good chromosomal preparations and for improving fish cytogenetics. In this sense, the direct chromosome preparation from kidney cells, adapted in our early studies since 70s and recently revised (Bertollo et al. 2015), was largely utilized over years. In addition, the progressive application of conventional banding techniques (C, AgNORs, DAPI, CMA3 staining), as well as more advanced methodologies combining cytogenetic and molecular procedures (chromosome mapping of DNA sequences by FISH, whole chromosome painting – WCP and comparative genomic hybridization – CGH) were essential tools in understanding the fish genome organization, particularly regarding to sex chromosome evolution and biodiversity investigations.

Although primarily and mainly devoted to freshwater species, the chromosomal analyses were also expanded to marine fishes, which is now the particular focus of some laboratories. From 1986 to now, successful biennual symposiums on fish cytogenetics are ongoing at different Brazilian regions. From some years ago, the discipline of genetics was also added to such meetings, with an expressive participation of professionals, students, as well as foreign invited researchers.

The catalogue of student theses, supervised in the Laboratory of Fish Cytogenetics of the Universidade Federal de São Carlos, comprises 42 doctoral theses and 52 master dissertations from 1981 to 2016. Informations about their corresponding students, taxa and matter subjects are available in the present communication, considering that not all the resulting data have been published. Theses/dissertations produced were assembled by taxonomic groups, according to Reis et al. (2003), regardless of their chronology. This criterion provides an overview of the different studied groups, considering that several families, genera and species have wider distribution and were subjected of more extensive investigations, being analyzed by different authors. The "taxa analyzed" item makes explicit when different populations, as well as different karyomorphs (karyotypes with distinct characteristics from each other) of a given species were investigated. The term “species group” was used for cases of specimens showing morphological similarities to a given valid species, but missing a proper taxonomic revision by the time they were studied.

Significantly, more than 20 research groups, nowadays located in different Brazilian regions, and also in Argentina, have emerged from such studies. These new researchers, along with those that have been emerged from the other pioneer laboratories, are now also engaged on fish chromosomal investigations. This was a preponderant condition for the big expansion experienced by the Brazilian fish cytogenetics.

The "Final Remarks" highlights some key contributions to fish evolutionary cytogenetics from MSc and PhD theses produced, as well as from other results that were led by our research team, some of them with significant colaborations of other national and international research groups.

Laboratory site at the Universidade Federal de São Carlos: (http://www.lcp.ufscar.br)

Abbreviations used

UFSCar Universidade Federal de São Carlos

INPA Instituto Nacional de Pesquisas da Amazônia

USP Universidade de São Paulo

UFRJ Universidade Federal do Rio de Janeiro

PPGGEv Programa de Pós-Graduação em Genética Evolutiva e Biologia Molecular

BADPI Programa de Pós-Graduação em Biologia de Água Doce e Pesca Interior

PPGERN Programa de Pós-Graduação em Ecologia e Recursos Naturais

PPGCB – Gene Programa de Pós-Graduação em Ciências Biológicas – Genética

PPGCB – Ecol Programa de Pós-Graduação em Ciências Biológicas – Ecologia

CAPES Coordenação de Aperfeiçoamento de Pessoal do Ensino Superior

FAPESP Fundação de Amparo à Pesquisa do Estado de São Paulo

CNPq Conselho Nacional de Desenvolvimento Científico e Tecnológico

Catalogue of MSc Dissertations and PhD Theses

Note: Titles of Theses and Dissertations maintain the taxonomic and/or systematic data as they were originally employed. The classification of some species and genera were later updated by review studies (Reis et al. 2003; Oliveira et al. 2011; FishBase), according to the section: taxon/taxa analyzed.

I. ORDER CHARACIFORMES

I.1. Family Characidae

I.1.1. Genus Astyanax Baird & Girard, 1854

I.1.1.1. MSc Dissertation by Sandra Morelli (1981): Aspectos citogenéticos do gênero Astyanax (Pisces, Characidae) / Cytogenetic studies in the genus Astyanax (Pisces, Characidae). Taxa analyzed: A. fasciatus (Cuvier, 1819), A. bimaculatus (Linnaeus, 1758), A. schubarti Britski, 1964, A. scabripinnis (Jenyns, 1842) – UFSCar / PPGERN / CNPq

I.1.1.2. PhD Thesis by Orlando Moreira Filho (1989): A diversidade no complexo scabripinnis (Pisces, Characidae, Tetragonopterinae). Análises citogenéticas e morfológicas. / Diversity investigation in the scabripinnis complex (Pisces, Characidae, Tetragonopterinae). Cytogenetic and morphological analyses. Taxon analyzed: A. scabripinnis – UFSCar / PPGERN

I.1.1.3. MSc Dissertation by Heloisa Helena Paganelli (1990): A variabilidade cromossômica no gênero Astyanax (Pisces, Characidae) e seu significado para a sistemática e evolução do grupo / Chromosomal variability in the genus Astyanax (Pisces, Characidae) and its significance for the systematics and evolution of the group. Taxa analyzed: A. bimaculatus, A. fasciatus, A. schubarti, A. taeniatus (Jenyns, 1842) -UFSCar / PPGERN

I.1.1.4. MSc Dissertation by Álvaro José Justi (1993): Caracterização cariotípica de populações de Astyanax fasciatus (Characidae) de bacias hidrográficas distintas / Karyotype characterization of Astyanax fasciatus populations (Characidae) from different river basins. Taxon analyzed: A. fasciatus – UFSCar / PPGGEv / FAPESP

I.1.1.5. MSc Dissertation by Vera Elisa Vicente (1994): Estudo do cromossomo B em três populações de Astyanax scabripinnis (Characidae) / B chromosome analysis in three Astyanax scabripinnis populations (Characidae). Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.6. MSc Dissertation by Issakar Lima Souza (1996): Estudos citogenéticos em populações de Astyanax scabripinnis (Characidae) pertencentes a dois riachos de diferentes bacias do Sudeste Brasileiro / Cytogenetic studies in populations of Astyanax scabripinnis (Characidae) from two different river basins of Southeastern Brazil.Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.7. PhD Thesis by Carlos Alberto Mestriner (1997): Caracterização molecular e citológica do DNA repetitivo de Astyanax scabripinnis (Pisces, Characidae) portador de cromossomos supranumerários / Molecular and cytological characterization of repetitive DNAs in Astyanax scabripinnis (Pisces, Characidae) carrying supernumerary chromosomes. Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.8. MSc Dissertation by María Pía Heras (1998): Estudos citogenéticos em Astyanax fasciatus (Characidae) de alguns rios do Brasil / Cytogenetic studies in Astyanax fasciatus (Characidae) from some Brazilian rivers. Taxon analyzed: A. fasciatus populations – UFSCar / PPGGEv / CNPq

I.1.1.9. MSc Dissertation by Daniela Morilha Néo (1999): Distribuição dos cromossomos B presentes em Astyanax scabripinnis (Characidae) ao longo do Ribeirão Grande na região de Campos do Jordão–SP / B chromosomes distribution in Astyanax scabripinnis (Characidae) along the Grande Stream, Campos do Jordão region–SP. Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.10. PhD Thesis by Dagmar Aparecida de Marco Ferro (2000): Análises cariotípicas dos cromossomos B em populações de Astyanax scabripinnis (Pisces, Characidae) / Karyotypic analyses of B chromosomes in Astyanax scabripinnis populations (Pisces, Characidae). Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / CNPq

I.1.1.11. MSc Dissertation by Monique Mantovani (2001): Citogenética comparativa entre populações de Astyanax scabripinnis (Characidae) da bacia do rio Paranapanema / Comparative cytogenetics among populations of Astyanax scabripinnis (Characidae) from the Paranapanema River basin. Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.12. MSc Dissertation by Luciano Douglas dos Santos Abel (2001): A variabilidade do complexo de espécies scabripinnis (Characidae) como estratégia adaptativa. Estudo da diversidade cariotípica do grupo com ênfase em populações da bacia do rio São Francisco / The variability of the scabripinnis species complex (Characidae) as an adaptive strategy. Analysis of the karyotypic diversity emphasizing populations from the São Francisco River basin. Taxon analyzed: A. scabripinnis – UFSCar / PPGGEv / FAPESP

I.1.1.13. PhD Thesis by Rubens Pazza (2005): Contribuição citogenética à análise da biodiversidade em Astyanax fasciatus (Pisces, Characidae) / Cytogenetic contribution to biodiversity analysis in Astyanax fasciatus (Pisces, Characidae). Taxon analyzed: A. fasciatus – UFSCar / PPGGEv / FAPESP

I.1.1.14. PhD Thesis by Wellington Adriano Moreira (2009): Análise citogenética de espécies de Astyanax (Characiformes) na região de transposição do rio Piumhi / Cytogenetic analysis of Astyanax species (Characiformes) from the transposition region of the Piumhi River. Taxa analyzed: A. scabripinnis, A. bimaculatus, A. lacustris (Lütken, 1875), A. altiparanae Garutti & Britski, 2000 – UFSCar / PPGGEv / FAPESP

I.1.2. Genus Bryconamericus Eigenmann, 1907

I.1.2.1. MSc Dissertation by Adriane Pinto Wasko (1996): Estudos citogenéticos no gênero Bryconamericus (Pisces, Characidae). Uma abordagem citotaxonômica-evolutiva / Cytogenetic studies in the Bryconamericus genus (Pisces, Characidae). A cytotaxonomic-evolutionary approach. Taxa analyzed: Bryconamericus sp A-E, Piabina argentea Reinhardt, 1867 – UFSCar / PPGGEv / CNPq

I.1.3. Genus Moenkhausia Eigenmann, 1903

I.1.3.1. MSc Dissertation by Elisangela Santana de Oliveira Dantas (2002): Estudos citogenéticos entre três espécies de Moenkhausia (Characidae, Tetragonopterinae) de localidades diferentes / Cytogenetic studies among three Moenkhausia species (Characidae, Tetragonopterinae), from different localities Taxa analyzed: Moenkhausia sanctae filomenae (Steindachner,1907), M. intermedia Eigenmann, 1908, Moenkhausia sp. – UFSCar / PPGGEv / FAPESP

I.1.4. Subfamily Bryconinae

I.1.4.1. Genus Brycon Müller & Troschel, 1844

I.1.4.1.1. MSc Dissertation by Vladimir Pavan Margarido (1995): Uma contribuição à citogenética de Bryconinae (Characiformes, Characidae) / A contribution to Bryconinae cytogenetics (Characiformes, Characidae). Taxa analyzed: Brycon brevicauda Günther, 1864, B. lundi Lütken, 1875, B. orbignyanus (Valenciennes,1850), B. microlepis Perugia, 1897), B. cephalus (Günther, 1869), B. insignis Steindachner, 1877, Brycon sp.- UFSCar / PPGGEv / CAPES

I.1.4.1.2. PhD Thesis by Adriane Pinto Wasko (2000): Marcadores cromossômicos e moleculares no gênero Brycon (Characidae): uma contribuição à biologia evolutiva e à conservação biológica destes peixes / Chromosomal and molecular markers in the genus Brycon (Characidae): a contribution to its evolutionary and conservation biology. Taxa analyzed: Brycon lundii, B. orbignyanus, B. microlepis, B. cephalus, B. brevicauda, B. insignis, Brycon sp. – UFSCar / PPGGEv / FAPESP/CNPq

I.1.5. Miscelaneous groups in Characidae

I.1.5.1. MSc Dissertation by Ana Luiza de Brito Silva Portela (1987): Citogenética de peixes da subfamília Tetragonopterinae (Characidae) / Fish cytogenetics of the Tetragonopterinae subfamily (Characidae). Taxa analyzed: Tetragonopterus chalceus Spix et Agassiz, 1829, Piabina argentea, Bryconamericus stramineus Eigenmann, 1908, Moenkhausia costae (Steindachner,1907), M. intermedia Eigenmann, 1908, Deuterodon pedri Eigenmann, 1908 – USP / PPGCB – Gene / CAPES

I.1.5.2. MSc Dissertation by Sandra Cristina Pfister (1997): Contribuição aos estudos cariotípicos da família Characidae da bacia do rio São Francisco – Três Marias (MG) / A contribution to the karyotypic studies in the family Characidae from the São Francisco River basin – Três Marias (MG).Taxa analyzed: Roeboides xenodon (Reinhardt, 1851), Orthospinus franciscensis (Eigenmann, 1914), Bryconops affinis (Günther, 1864), Hemigrammus marginatus Ellis, 1911, Moenkhausia costae – UFSCar / PPGGEv / CNPq

I.1.5.3. PhD Thesis by Issakar Lima Souza (2003): rDNAs nucleares e bandamentos cromossômicos em Salmininae e Astyanax scabripinnis (Characidae) / Nuclear rDNAs and chromosome banding in Salmininae and Astyanax scabripinnis (Characidae). Taxa analyzed: A. scabripinnis, Salminus brasiliensis (Cuvier, 1816), S. hilarii Valenciennes, 1850 – UFSCar / PPGGEv / CNPq / FAPESP

I.1.5.4. MSc Dissertation by Wellington Adriano Moreira Peres (2005): Análise da diversidade cariotípica de Characidae da bacia do São Francisco / Analysis on karyotypic diversity of Characidae fishes from the São Francisco River basin. Taxa analyzed: Orthospinus franciscensis, Serrapinnus heterodon (Eigenmann, 1915), S. piaba (Lütken,1875), Astyanax fasciatus, A. bimaculatus, Haseamania nana (Lütken, 1875), Piabina argentea – UFSCar / PPGGEv / FAPESP

I.2. Family Prochilodontidae

I.2.1. Genus Prochilodus Agassiz, in Spix et Agassiz, 1829

I.2.1.1. MSc Dissertation by Erica Pauls (1981): Evidências de um sistema de cromossomos supranumerários em Prochilodus scrofa Steindachner, 1881 (Pisces, Prochilodontidae) / Evidences for a supernumerary chromosome system in Prochilodus scrofa Steindachner, 1881 (Pisces, Prochilodontidae). Taxon analyzed: Prochilodus lineatus (Valenciennes, 1836), cited as P. scrofa – UFSCar / PPGERN / CNPq

I.2.1.2. PhD Thesis by Erica Pauls (1985): Considerações sobre evolução cromossômica e sistema de cromossomos supranumerários em espécies do gênero Prochilodus (Pisces, Prochilodontidae) / Considerations on chromosomal evolution and supernumerary chromosome systems in Prochilodus species (Pisces, Prochilodontidae). Taxa analyzed: P. lineatus (cited as P. scrofa), P. vimboides Kner, 1859, P. brevis Steindacher, 1875 (cited as P. cearensis Steindachner, 1911), P. argenteus Agassiz, 1829, P. margravii (rejected by ICZN; under synonymy of P. argenteus), P. costatus Valenciennes, 1850 (cited as P. affinis Lütken, 1875, P. nigricans Agassiz, 1829 – UFSCar / PPGERN / CNPq

I.2.1.3. MSc Dissertation by Zélia Isabel Cavallaro (1992): Estudos comparativos sobre os cromossomos B de Prochilodus scrofa Steindachner, 1881 (Pisces, Prochilodontidae) / Comparative studies on B chromosomes of Prochilodus scrofa Steindachner, 1881 (Pisces, Prochilodontidae). Taxon analyzed: P. lineatus, cited as P. scrofa – UFSCar / PPGERN / CAPES

I.2.1.4. PhD Thesis by Terumi Hatanaka (2000): Marcadores cromossômicos e moleculares no peixe Prochilodus marggravii: uma espécie de interesse econômico no rio São Francisco / Chromosomal and molecular markers in Prochilodus marggravii, a fish species with economic significance from the São Francisco River.Taxon analyzed: P. argenteus (cited as P. margravii: rejected by ICZN)- UFSCar / PPGGEv / FAPESP

I.2.1.5. PhD Thesis by Célia Maria de Jesus (2001): Caracterização de sequências repetitivas no genoma de Prochilodus lineatus (Prochilodontidae) portador de cromossomos B / Characterization of repetitive sequences in the genome of Prochilodus lineatus (Prochilodontidae) carrying B chromosomes. Taxon analyzed: P. lineatus – UFSCar / PPGGEv / CNPq / FAPESP

I.3. Family Parodontidae

I.3.1. MSc Dissertation by Orlando Moreira Filho (1983): Estudos na família Parodontidae (Pisces, Characiformes – cited as Cypriniformes) da bacia do rio Passa-Cinco (SP): aspectos citogenéticos e considerações correlatas / Studies in Parodontidae species (Pisces, Characiformes) from the Passa-Cinco River Basin (SP): cytogenetic and correlated considerations.Taxa analyzed: Apareiodon affinis (Steindachner, 1879), A. ibitiensis Campos, 1944, A. piracicabae (Eigenmann, 1907), Parodon nasus Kner, 1859 (cited as P. tortuosus Eigenmann & Norris, 1900) – UFSCar / PPGERN

I.3.2. MSc Dissertation by Célia Maria de Jesus (1996): Contribuição aos estudos citogenéticos na família Parodontidae (Characiformes) / Contribution to cytogenetic studies in the family Parodontidae (Characiformes). Taxa analyzed: Parodon nasus (cited as P. tortuosus), P. pongonensis (Allen, 1942) (cited as Parodon sp), Apareiodon affinis, A. ibitiensis, A. piracicabae, A.vitattus Garavello, 1977- UFSCar / PPGGEv / FAPESP

I.3.3. PhD Thesis by Vera Elisa Vicente (2001): Estudos citogenéticos e moleculares em Parodon hilarii e correlações com outras espécies da família Parodontidae (Characiformes) / Cytogenetic and molecular studies in Parodon hilarii and correlations with other Parodontidae species. Taxa analyzed: P. hilarii Reinhardt, 1866, P. nasus (cited as P. tortuosus) – UFSCar / PPGGEv / CNPq

I.3.4. MSc Dissertation by Elisangela Bellafronte da Silva (2004): Estudos citogenéticos comparativos em espécies do gênero Parodon (Parodontidae) / Comparative cytogenetics in Parodon species (Parodontidae).Taxon analyzed: P. nasus – UFSCar / PPGGEv / CNPq

I.3.5. PhD Thesis by Josiane Baccarin Traldi (2015): Investigação do papel dos DNAs repetitivos na evolução cromossômica de espécies de Apareiodon (Characiformes, Parodontidae) / Investigation on the role of repetitive DNAs in the chromosomal evolution of Apareiodon species (Characiformes, Parodontidae). Taxa analyzed: A. cavalcante Pavanelli & Britski, 2003, A. machrisi Travassos, 1957, A. argenteus Pavanelli & Britski, 2003, A. davisi Fowler, 1941, Apareiodon sp. 1, Apareiodon sp. 2 – UFSCar / PPGGEv / FAPESP

I.4. Family Erythrinidae

I.4.1. MSc Dissertation by Lucia Giuliano Caetano (1986): Estudo citogenético em Hoplerythrinus unitaeniatus (Pisces, Erythrinidae) de diferentes bacias hidrográficas brasileiras / Cytogenetic studies in Hoplerythrinus unitaeniatus (Pisces, Erythrinidae) from different Brazilian river basins. Taxon analyzed: H. unitaeniatus (Agassiz, 1829) – UFSCar / PPGERN / CNPq

I.4.2. MSc Dissertation by Jorge Abdala Dergam dos Santos (1989): O cariótipo de Hoplias malabaricus em populações da bacia do São Francisco e do Alto Paraná. Considerações citotaxonômicas / The karyotype of Hoplias malabaricus populations from the São Francisco and High Paraná River basins. Cytotaxomic considerations. Taxon analyzed: H. malabaricus (Block, 1794) karyomorphs D, F – USP / PPGCB – Gene / CAPES

I.4.3. PhD Thesis by Sandra Morelli (1998): Citogenética evolutiva em espécies do gênero Hoplias, grupo H. lacerdae. Macroestrutura cariotípica, heterocromatina constitutiva e regiões organizadoras de nucléolos / Evolutionary cytogenetics in Hoplias lacerdae species group. Karyotype macrostructure, constitutive heterochromatin and nucleolus organizing regions. Taxon analyzed: H. lacerdae Miranda Ribeiro, 1908 species group – UFSCar / PPGGEv / CNPq

I.4.4. PhD Thesis by Guassenir Gonçalves Born (2000): Estudo da diversidade cariotípica no grupo Hoplias malabaricus (Pisces, Erythrinidae). Cariótipo 2n=42 / Study on the karyotypic diversity in the Hoplias malabaricus species group (Pisces, Erythrinidae). The karyotype 2n=42. Taxon analyzed: H. malabaricus karyomorphs A, B – UFSCar / PPGGEv / CAPES

I.4.5. MSc Dissertation by Débora Diniz Bezerra (2002): Estudos citogenéticos populacionais em Hoplerythrinus unitaeniatus (Pisces, Erythrinidae). Análise da biodiversidade / Population cytogenetic studies in Hoplerythrinus unitaeniatus (Pisces, Erythrinidae). Biodiversity analysis. Taxon analyzed: H. unitaeniatus – UFSCar / PPGGEv / CNPq

I.4.6. MSc Dissertation by Marcelo Ricardo Vicari (2003): Citogenética comparativa de Hoplias malabaricus (Pisces, Erythrinidae). Estudos em região divisora de águas das bacias dos rios Tibagi, Iguaçu, Ivaí e Ribeira (Ponta Grossa, PR) / Comparative cytogenetics of Hoplias malabaricus (Pisces, Erythrinidae). Studies in the water divisor region of the Tibagi, Iguaçu, Ivaí and Ribeira Rivers (Ponta Grossa, PR). Taxon analyzed: H. malabaricus – UFSCar / PPGGEv / FAPESP

I.4.7. MSc Dissertation by Marcelo de Bello Cioffi (2010): Marcadores cromossômicos em Hoplias malabaricus (Characiformes, Erythrinidae). Citogenética comparativa entre cariomorfos / Chromosome markers in Hoplias malabaricus (Characiformes, Erythrinidae. Comparative cytogenetics among karyomorphs. Taxon analyzed: H. malabaricus karyomorphs A, B, C, D – UFSCar / PPGGEv / FAPESP

I.4.8. MSc Dissertation by Daniel Rodrigues Blanco (2010): Caracterização citogenética em populações alopátricas do gênero Hoplias, com enfoque nos grupos malabaricus e lacerdae / Cytogenetic characterization of allopatric populations of the Hoplias genus, focusing on the malabaricus and lacerdae groups. Taxa analyzed: H. malabaricus, H. aimara (Valenciennes, 1847), H. intermedius (Günther, 1864) – UFSCar / PPGGEv / FAPESP

I.4.9. PhD Thesis by Marcelo de Bello Cioffi (2011): Evolução cromossômica na família Erythrinidae. Mapeamento citogenético de DNAs repetitivos e microdissecção de cromossomos sexuais / Chromosome evolution in the Erythrinidae family. Cytogenetic mapping of repetitive DNAs and microdissection of sex chromosomes. Taxa analyzed: Hoplias malabaricus karyomorphs A, B, C, D, Erythrinus erythrinus (Bloch & Schneider, 1801) karyomorphs A, D – UFSCar / PPGGEv / FAPESP

I.4.10. MSc Dissertation by Nícolas Fernandes Martins (2013): Diferenciação cromossômica em Erythrinus erythrinus (Characiformes, Erythrinidae) / Chromosomal differentiation in Erythrinus erythrinus (Characiformes, Erythrinidae). Taxon analyzed: E. erythrinus karyomorphs A, C – UFSCar / PPGGEv / CAPES

I.4.11. MSc Dissertation by Juliana de Fátima Martinez (2014): Hoplerythrinus unitaeniatus (Characiformes, Erythrinidae): um complexo de espécies. Estudos citogenéticos e moleculares / Hoplerythrinus unitaeniatus (Characiformes, Erythrinidae): a species complex. Cytogenetic and molecular analyses. Taxon analyzed: H. unitaeniatus – UFSCar / PPGGEv / FAPESP

I.4.12. MSc Dissertation by Ezequiel Aguiar de Oliveira (2015): Evolução cromossômica em peixes da família Erythrinidae (Characiformes). Citogenética comparativa entre espécies do gênero Hoplias / Chromosome evolution in the fish family Erythrinidae (Characiformes). Comparative cytogenetics among Hoplias species. Taxa analyzed: H. aimara, H. brasiliensis (Agassiz, 1829), H. lacerdae, H. intermedius – UFSCar / PPGGEv / CAPES

I.5. Family Serrasalmidae (Former Serrasalminae, Characidae)

I.5.1. MSc Dissertation by Marta Margarete Cestari (1990): Diferenciação cromossômica no gênero Serrasalmus La Cèpede, 1803 e evolução do cariótipo em Serrasalminae (Pisces, Characidae) / Chromosomal differentiation in the genus Serrasalmus La Cèpede, 1803 and karyotypic evolution in Serrasalminae (Pisces, Characidae). Taxa analyzed: S. spilopleura Kner, 1858, S. humerallis Valenciennes, 1850, S. brandti (Lütken, 1875) – UFSCar / PPGERN / CNPq

I.5.2. PhD Thesis by Marta Margarete Cestari (1996): Estudos citogenéticos e genético-bioquímicos do gênero Serrasalmus (Pisces, Serrasalminae) / Cytogenetic and genetic-biochemical studies in the genus Serrasalmus (Pisces, Serrasalminae).Taxa analyzed: S. spilopleura, S. marginatus Valenciennes, 1837 -UFSCar / PPGGEv / CAPES

I.5.3. PhD Thesis by Jorge Ivan Rebelo Porto (1999): Análises cariotípicas e sequenciamento de DNA mitocondrial em populações de Mylesinus paraschomburgkii (Characiformes, Serrasalminae) da bacia amazônica / Karyotypic analyses and mtDNA sequencing in Mylesinus paraschomburgkii populations (Characiformes, Serrasalminae) from the Amazon Basin. Taxon analyzed: M. paraschomburgkii Jégu, Santos & Ferreira, 1989 – INPA/BADPI/CNPq

I.5.4. PhD Thesis by Celeste Mutuko Nakayama (2007): Citogenética molecular comparativa do DNAr 18S e DNAr 5S em piranhas (Characidae, Serrasalminae) da Amazônia Central / Comparative molecular cytogenetics of the 18S and 5S rDNAs in piranhas (Characidae, Serrasalminae) from the Central Amazon. Taxa analyzed: Serrasalmus altispinnis Merchx, Jégu & Santos, 2000, S. elongatus Kner, 1858, S. gouldingi Fink & Machado-Allison, 1992, S. rhombeus (Linnaeus, 1766), S. serrulatus (Valenciennes, 1850), S. maculatus Kner, 1858, S. cf. rhombeus, Pygocentrus nattereri Kner, 1858, Pristobrycon striolatus (Steindachner, 1908), Catoprion mento (Cuvier, 1819) – UFSCar / PPGGEv / CNPq

I.6. Family Triportheidae (former Triportheinae, Characidae)

I.6.1. PhD Thesis by José das Neves Falcão (1988): Caracterização cariotípica em peixes do gênero Triportheus (Teleostei, Characiformes, Characidae) / Karyotypic characterization of Triportheus fish (Teleostei, Characiformes, Characidae). Taxa analyzed: T. signatus (Garman, 1890), T. angulatus (Spix & Agassiz, 1829) (cited as T. flavus Cope, 1872), T. albus Cope, 1872, T. culter (Cope, 1872), T. auritus (Valenciennes, 1850) (cited as T. elongatus (Günther, 1864) – USP / PPGCB – Gene / CAPES

I.6.2. PhD Thesis by Roberto Ferreira Artoni (1999): Citogenética do sistema de cromossomos sexuais ZZ/ZW no gênero Triportheus (Pisces, Characidae) / Cytogenetics of the ZZ/ZW sex chromosome system in the genus Triportheus (Pisces, Characidae). Taxa analyzed: Triportheus cf. auritus, cited as T. cf. elongatus, T. guentheri (Garman, 1890), T. nematurus (Kner, 1858) (cited as T. paranensis (Günther, 1874) – UFSCar / PPGGEv / FAPESP

I.6.3. PhD Thesis by Débora Diniz Bezerra (2007): Origem e diferenciação do sistema de cromossomos sexuais ZZ/ZW em Triportheus (Characiformes, Characidae). Citogenética, mapeamento de genes ribossomais e microdissecção cromossômica / Origin and differentiation of the ZZ/ZW sex chromosome system in Triportheus (Characiformes, Characidae). Cytogenetic mapping of ribosomal genes and chromosomal microdissection. Taxa analyzed: T. nematurus, T. guentheri, T. trifurcatus (Castelnau, 1855), T. auritus, T. angulatus, T. albus, Triportheus cf. signatus – UFSCar / PPGGEv / CNPq

I.6.4. PhD Thesis by Cássia Fernanda Yano (2016): Estudos evolutivos no gênero Triportheus (Characiformes, Triportheidae) com enfoque na diferenciação do sistema de cromossomos sexuais ZZ/ZW / Evolutionary studies in the Triportheus genus (Characiformes, Triportheidae) foccusing on the differentiation of the ZZ/ZW sex chromosome system. Taxa analyzed: T. auritus, T. guentheri, T. albus, Triportheus aff. rotundatus (Jardine, 1841), T. nematurus, T. signatus, T. trifurcatus, T. pantanensis Malabarba, 2004 – UFSCar / PPGGEv / CAPES

I.7. Family Curimatidae

I.7.1. PhD Thesis by Eliana Feldberg (1990): Estudos citogenéticos em doze espécies de peixes da família Curimatidae (Characiformes) da Amazônia Central / Cytogenetic studies of twelve Curimatidae species (Characiformes) from the Central Amazon.Taxa analyzed: Potamorhina pristigaster (Steindachner, 1876), P. altamazonica (Cope, 1878), P. latior (Spix & Agassiz, 1829), Curimata ocellata (Eigenmann & Eigenmann, 1889), C. vittata (Kner, 1858), C. kneri (Steindachner, 1876), C. cyprinoides (Linnaeus, 1766), Curimata sp, Psectrogaster rutiloides (Kner, 1858), Curimatella alburna (Müller & Troschel, 1844), C. meyeri (Steindachner, 1882) – INPA / BADPI

I.7.2. MSc Dissertation by Paulo Cesar Venere (1991): Citogenética comparativa de peixes da família Curimatidae (Characiformes) / Comparative cytogenetics of Curimatidae fish (Characiformes). Taxa analyzed: Cyphocharax gilberti (Quoy et Gaimard, 1824), C. modestus (Fernández-Yépez, 1948), C. nagellii (Steindachner, 1881), C. vanderi (Britski, 1980), C. voga (Hensel, 1870), Cyphocharax sp., Steindachnerina elegans (Steindachner, 1874), Steindachnerina sp., S. insculpta (Fernández-Yépez, 1948), Curimatella lepidura (Eigenmann & Eigenmann, 1889) – UFSCar / PPGERN / CAPES

I.7.3. PhD Thesis by Rosângela Martins de Oliveira (2011): Citogenética clássica e molecular de três espécies de curimatídeos, com ênfase no cromossomo B de Cyphocharax nagelli (Characiformes, Curimatidae) / Conventional and molecular cytogenetics in three curimatid species, with emphasis on the B chromosome of Cyphocharax nagelli (Characiformes, Curimatidae). Taxa analyzed: C. nagelli, C. modestus, Steindachnerina insculpta – UFSCar / PPGGEv / CAPES/CNPq

I.8. Family Crenuchidae (former Characidiinae, Characidae)

I.8.1. MSc Dissertation by Carlos Suetoshi Miyazawa (1991): Estudos citogenéticos em peixes do grupo Characidium (Characidiinae, Characidae), de distintas bacias hidrográficas / Cytogenetic studies in Characidium (Characidiinae, Characidae) species from different hydrographic basins.Taxa analyzed: C. pterostictum Gomes, 1947, Characidium cf. zebra Eigenmann, 1909, Characidium cf. lagosantense Travassos, 1947, Characidium sp. – UFSCar / PPGERN / CAPES

I.9. Family Anostomidae

I.9.1. MSc Dissertation by Carlos Alberto Mestriner (1993): Análise das regiões organizadoras de nucléolo e investigação do sistema XX/XY descrito para Leporinus lacustris (Pisces, Anostomidae) / Analyses of the nucleolus organizer regions and investigation of the XX/XY sex system of Leporinus lacustris (Pisces, Anostomidae). Taxon analyzed: L. lacustris Campos, 1945 – UFSCar / PPGGEv / FAPESP

I.9.2. MSc Dissertation by Wagner Franco Molina (1995): Cromossomos sexuais e polimorfismo cromossômico no gênero Leporinus (Pisces, Anostomidae) / Sex chromosomes and chromosomal polymorphism in the genus Leporinus (Pisces, Anostomidae).Taxa analyzed: L. elongatus Valenciennes, 1850, L. obtusidens (Valenciennes, 1836), L. reinhardti Lütken, 1875, Leporinus aff. elongatus – UFSCar / PPGGEv / CAPES

I.9.3. MSc Dissertation by Cesar Martins (1997): Novas contribuições à citogenética de Anostomidae (Pisces, Characiformes). Citotaxonomia e filogenia no gênero Schizodon / New contributions to cytogenetics of Anostomidae (Pisces, Characiformes). Cytotaxonomy and phylogeny of the genus Schizodon. Taxa analyzed: S. altoparanae Garavello & Britski, 1990, S. nasutus Kner, 1858, S. knerii (Steindachner, 1875), S. vittatus (Valenciennes, 1850), S. fasciatus Spix & Agassiz, 1829, S. borelli (Boulenger, 1900), S. isognathus Kner, 1858, S. intermedius Garavello & Britski, 1990 – UFSCar / PPGGEv / CNPq

I.9.4. MSc Dissertation by Suelen Regina Lopes Krichanã (1999): Contribuição ao estudo citogenético da família Anostomidae (Pisces, Characiformes) na região Amazônica / Contribution to the cytogenetics of the family Anostomidae (Pisces, Characiformes) from the Amazon region- Taxa analyzed: Laemolita taeniata (Kner, 1858), Leporinus agassizii Steindachner, 1876, Leporinus cylindriformis Borodin, 1929, Leporinus fasciatus, Leporinus friderici, Leporinus granti Eigenmann, 1912, Rhythiodus microlepis, Schizodon fasciatus – UFSCar / PPGGEv

I.9.5. PhD Thesis by Cesar Martins (2000): Organização do DNA ribossômico 5S no genoma de peixes, com ênfase em Leporinus / Organization of the 5S rDNA in the fish genome, with emphasis on Leporinus. Taxa analyzed: L. elongatus, L. obtusidens, L. friderici (Block, 1794), L. cf. elongatus, L. reinhardti, L. piau Fowler, 1941, L. desmotes Fowler, 1914, L. conirostris Steindachner, 1875, Schizodon altoparanae, S. borelli, S. isognathus, S. nasutus, S. knerii, S. vittatus – UFSCar / PPGGEv / FAPESP

I.9.6. PhD Thesis by Vladimir Pavan Margarido (2000): Uma contribuição à citogenética de Anostomidae, com ênfase na variabilidade das regiões organizadoras de nucléolos no gênero Leporinus (Pisces, Characiformes) / Contribution to Anostomidae cytogenetics, with emphasis on the variabilty of the nucleolar organizing regions in the genus Leporinus (Pisces, Characiformes). Taxa analyzed: L. copelandii Steindachner, 1875, L. conirostris, L. desmotes, L. elongatus, L. cf. elongatus, L. fasciatus (Block, 1794), L. friderici, L. lacustris, L. macrocephalus Garavello and Britski, 1988, L. mormyrops Steindachner, 1875, L. obtusidens, L. octofasciatus Steindacher, 1915, L. piau, L. reinhardti, L. striatus Kner, 1858, L. taeniatus Lütken, 1875, L. tigrinus Borodin, 1929 – UFSCar / PPGGEv / CNPq

I.9.7. PhD Thesis by Cecília Teixeira de Aguilar (2001): Estudos citogenéticos e moleculares em populações brasileiras de Leporellus vittatus (Characiformes, Anostomidae) / Cytogenetic and molecular studies in Brazilian populations of Leporellus vittatus (Characiformes, Anostomidae). Taxon analyzed: L. vittatus (Valenciennes, 1850) – UFSCar / PPGGEv / CAPES

II. ORDER SILURIFORMES

II.1. Family Heptapteridae

II.1.1. MSc Dissertation by Alberto Sergio Fenocchio (1987): Polimorfismo cromossômico em Rhamdia hilarii (Pisces, Heptapteridae citado como Pimelodidae) / Chromosomal polymorphism in Rhamdia hilarii (Pisces, Heptapteridae). Taxon analyzed: R. quelen (Quoy & Gaimard, 1824) (cited as Rhamdia hilarii (Valenciennes, 1840) – USP / PPGCB – Gene / CNPq

II.2. Family Loricariidae

II.2.1. MSc Dissertation by Roberto Ferreira Artoni (1996): Estudos citogenéticos na família Loricariidae, com especial ênfase no gênero Hypostomus Lacepede (1803) – Pisces, Siluriformes / Cytogenetic studies in the family Loricariidae, with special emphasis on the Hypostomus genus Lacepede (1803) – Pisces, Siluriformes. Taxa analyzed: H. ancistroides (Ihering, 1911), H. regani (Ihering, 1905), H. albopunctatus (Regan, 1908), Hypostomus aff. auroguttatus Kner, 1854, Squaliforma emarginata (Valenciennes, 1840) (cited as Hypostomus emarginatus Valenciennes in Cuvier et Valenciennes, 1840), Hypostomus sp., Rhinelepsis aspera Spix & Agassiz, 1829, Liposarcus sp., Pogonopoma wertheimeri (Steindachner, 1867), Panaque cf. nigrolineatus (Peters, 1877), Hemiancistrus sp., Sturisoma cf. nigrirostrum Fowler, 1940 -UFSCar / PPGGEv / CNPq

II.2.2. PhD Thesis by Lúcia Giuliano-Caetano (1998): Polimorfismo cromossômico Robertsoniano em populações de Rineloricaria latirostris (Pisces, Loricariidae) / Robertsonian chromosomal polimorphism in Rineloricaria latirostris populations (Pisces, Loricariidae).Taxa analyzed: R. rialatirostris (Boulenger, 1900), R. pentamaculata Langeani & Araujo, 1994 -UFSCar / PPGGEv / CAPES

II.2.3. MSc Dissertation by Fábio Mendes Camilo (2004): Estudos citogenéticos de algumas espécies de peixes da família Loricariidae pertencentes à bacia do rio Piracicaba / Cytogenetic studies in Loricariidae fish species from the Piracicaba River basin.Taxa analyzed: Corumbatai acuestae Britsky, 1997, Liposarcus anisitsi (Eigenmann & Kennedy, 1903), Hypostomus albopunctatus -UFSCar / PPGGEv

II.2.4. PhD Thesis by Sandra Mariotto (2008): Estudo citogenético clássico e molecular em quinze espécies da tribo Ancistrini (Siluriformes, Loricariidae) de três bacias hidrográficas brasileiras / Conventional and molecular cytogenetic studies in 15 Ancistrini species (Siluriformes, Loricariidae) from three Brazilian hidrographic basins. Taxa analyzed: Ancistrus cf. dubius Eigenmann & Eigenmann, 1889, and other not identified Ancistrus species – UFSCar / PPGGEv / CNPq / CAPES

II.2.5. MSc Dissertation by Ernani de Oliveira Mendes Neto (2008): Estudos citogenéticos em algumas espécies de Loricariidae (Teleostei, Siluriformes) da região de transposição do rio Piumhi para o rio São Francisco / Cytogenetic studies in Loricariidae species (Teleostei, Siluriformes) from the transposition region of the Piumhi River into the São Francisco River. Taxa analyzed: Hypostomus regani, Hypostomus sp.1, Hypostomus sp. 2, Rineloricaria cf. latirostris – UFSCar / PPGGEv / FAPESP

II.2.6. PhD Thesis by Marceleia Rubert (2011): Estudos citogenéticos em espécies das tribos Hipostomini e Ancistrini (Loricariidae, Hypostominae) / Cytogenetic studies in Hipostomini and Ancistrini species (Loricariidae, Hypostominae). Taxa analyzed: Ancistrus brevipinnis (Regan, 1904), A. multispinis (Regan, 1912), Hemiancistrus punctulatus Cardoso & Malabarba, 1999, Hypostomus albopunctatus, H. cochiodon Kner, 1854, H. commersoni Valenciennes, 1836, H. heraldoi Zawadzki, Weber & Pavanelli, 2008, H. hermanni (Ihering, 1905), H. iheringii (Regan, 1908), H. mutucae Knaack, 1999, H. nigromaculatus (Schubart, 1964), H. paulinus (Ihering, 1905), H. aff. paulinus, H. regani, H. strigaticeps (Regan, 1908) – UFSCar / PPGGEv / CAPES / CNPq

II.2.7. MSc Dissertation by Josiane Baccarin Traldi (2012): Citogenética comparativa em espécies de Hypostomus (Siluriformes, Loricariidae, Hypostominae). Contribuição da fração repetitiva do genoma para a diversidade cromossômica do grupo / Comparative cytogenetics in Hypostomus species (Siluriformes, Loricariidae, Hypostominae). Contribution of the repetitive genomic fraction to chromosomal diversity. Taxa analyzed: H. ancistroides, H. iheringii, H. nigromaculatus, H. tapijara Oyakawa, Akama & Zanata, 2005 – UFSCar / PPGGEv / FAPESP

II.2.8. PhD Thesis by Daniel Rodrigues Blanco (2012): Estudos citogenéticos clássicos e moleculares em espécies do gênero Harttia (Siluriformes, Loricariidae), com enfoque no papel dos DNAs repetitivos na evolução cariotípica do grupo / Conventional and molecular cytogenetic studies in Harttia species (Siluriformes, Loricariidae), focusing on the role of repetitive DNAs in the karyotypic evolution. Taxa analyzed: H. loricariformes Steindachner, 1877, H. longipinna Langeani, Oyakawa & Montoya-Burgos, 2001, H. kronei Miranda Ribeiro, 1908, H. gracilis Oyakawa, 1993, H. punctata Rapp Py-Daniel & Oliveira, 2001, H. torrenticola Oyakawa, 1993, H. carvalhoi Miranda Ribeiro, 1939 – UFSCar / PPGGEv / FAPESP

II.3. Family Auchenipteridae

II.3.1. MSc Dissertation by Roberto Laridondo Lui (2010): Análises comparativas citogenéticas e do DNA mitocondrial em Parauchenipterus galeatus Bleeker, 1862 (Siluriformes, Auchenipteridae) coletados no alto rio Paraná, no alto rio São Francisco e no rio Piumhi: um enfoque biogeográfico / Cytogenetic and mtDNA comparative analyses in Parauchenipterus galeatus Bleeker, 1862 (Siluriformes, Auchenipteridae) from the upper Paraná, Upper São Francisco and Piumhi Rivers: a biogeographical focus.Taxon analyzed: Trachelyopterus galeatus (Linnaeus, 1766) [cited as P. galeatus (Linnaeus, 1766)] – UFSCar / PPGGEv / FAPESP

II.3.2. PhD Thesis by Roberto Laridondo Lui (2012): Estudos evolutivos em Auchenipteridae (Siluriformes): citogenética, DNA mitocondrial e DNA satélite / Evolutionary studies in Auchenipteridae (Siluriformes): cytogenetics, mtDNA and satellite DNA.Taxa analyzed: Ageneiosus inermis (Linnaeus, 1766), Glanidium ribeiroi (Haseman, 1911), Trachelyopterus galeatus (cited as Parauchenipterus galeatus), Trachelyopterus striatulus (Steindachner, 1877) [cited as Parauchenipterus striatulus (Steindachner, 1877)], Trachelyopterus sp., T. neivai (Ihering, 1930), Tatia jaracatia Pavanelli & Bifi, 2009- UFSCar / PPGGEv / FAPESP

III. ORDER PERCIFORMES

III.1. Family Cichlidae

III.1.1. MSc Dissertation by Eliana Feldberg (1983): Estudos citogenéticos em 10 espécies da família Cichlidae (Pisces, Perciformes) / Cytogenetic studies in ten Cichlidae species (Pisces, Perciformes). Taxa analyzed: Astronotus ocellatus (Agassiz, 1831), Cichlasoma facetum (Jenyns, 1842), Chaetobranchopsis australe Eigenmann & Ward, 1907, Crenicichla lacustris (Castelnau, 1855), C. lepidota Keckel,1840, C. vittata Heckel, 1840, C. semifasciata (Heckel, 1840) (cited as Batrachops semifasciatus Heckel, 1840), Geophagus brasiliensis (Quoy & Gaimard, 1824), G. surinamensis (Block, 1791), Gymnogeophagus balzanii (Perugia, 1891) -UFSCar / PPGERN / CAPES

III.2. Family Serranidae

III.2.1. MSc Dissertation by Cecilia Texeira Aguilar (1993): Estudos citogenéticos em peixes da família Serranidae (Osteichthyes- Perciformes) ocorrentes na Baía de Guanabara – RJ / Cytogenetic studies in fishes of the family Serranidae (Osteichthyes-Perciformes) from the Guanabara Bay – RJ. Taxa analyzed: Diplectrum radiale (Quoy & Gaimard, 1824), D. formosum (Linnaeus, 1766), Epinephelus marginatus (Lowe, 1834) (cited as Epinephelus guaza; not of Linnaeus, 1758), Mycteroperca rubra (Bloch,1793), Serranus flaviventris (Cuvier, 1829) – UFRJ / PPGCB – Gene / CAPES

III.3. Family Pomacentridae

III.3.1. PhD Thesis by Wagner Franco Molina (2000): Análise da diversidade genética na famíla Pomacentridae (Pisces, Perciformes), utilizando métodos combinados de citogenética, marcadores moleculares e morfometria / Analysis of the genetic diversity in the family Pomacentridae (Pisces, Perciformes), employing cytogenetic, molecular and morphometric methods. Taxa analyzed: Stegastes fuscus (Cuvier, 1830), S. variabilis (Castelnau, 1855), S. leucostictus (Müller & Troschel, 1848), S. pictus (Castelnau, 1855), S. rocasensis (Emery, 1972), S. sanctipauli Lubbock & Edwards, 1981, Abudefduf saxatilis (Linnaeus, 1758), Chromis multilineata (Guichenot, 1853), C. insolata (Cuvier, 1830), C. flavicauda (Günther, 1880), Microspathodon chrysurus (Cuvier, 1830), Amphiprion frenatus Brevoort, 1856 – UFSCar / PPGGEv / CAPES

IV. ORDER OSTEOGLOSSIFORMES

IV.1. Family Arapaimidae

IV.1.1. PhD Thesis by Débora Karla Marques (2003): Caracterização genética do pirarucu, Arapaima gigas (Teleostei, Arapaimidae) / Genetic characterization of the pirarucu, Arapaima gigas (Teleostei, Arapaimidae). Taxon analyzed: A. gigas (Schinz, 1822) – UFSCar / PPGGEv

V. MISCELANEOUS GROUPS

V.1. MSc Dissertation by José das Neves Falcão (1983): Estudos citogenéticos em Acestrorhynchinae e Cynopotaminae (Pisces, Characidae) / Cytogenetic studies in Acestrorhynchinae and Cynopotaminae (Pisces, Characidae). Taxa analyzed: Order Characiformes – Family Acestrorhynchidae: Acestrorhynchus altus Menezes, 1969, A. lacustris (Lütken, 1875), Family Characidae: Galeocharax knerii (Steindacher, 1879), Oligosarcus hepsetus (Cuvier, 1829), O. jenynsii (Günther, 1864), Oligosarcus sp., O. pintoi Amaral Campos, 1945 (cited as Paroligosarcus pintoi) – USP / PPGCB – Gene / CAPES

V.2. PhD Thesis by Mario Jorge Ignacio Brum (1994): A evolução cariotípica dos teleósteos marinhos e suas correlações com a filogenia deste grupo / Karyotype evolution of marine teleosts and its correlation with the phylogeny of the group. Taxa analyzed – Order Clupeiformes – Family Clupeidae: Brevoortia aurea (Spix & Agassiz, 1829); Order Perciformes–Family Haemulidae: Orthopristis ruber (Cuvier, 1830); Family Blenniidae: Scartella cristata (Linnaeus, 1758) – Order Tetraodontiformes – Family Tetraodontidae: Sphaeroides greeleyi Gilbert, 1900 – UFSCar / PPGGEv

V.3. MSc Dissertation by Lilian Cristina Jorge (1995): Estudos citogenéticos comparativos de algumas espécies de peixes da região de Corrientes (Argentina) com as do Alto Paraná / Comparative cytogenetic studies of some fish species from the Corrientes region (Argentina) with those of the upper Paraná River basin.Taxa analyzed – Order Characiformes – Family Characidae: Astyanax bimaculatus; Family Parodontidae: Apareiodon affinis; Family Anostomidae: Leporinus obtusidens; Family Erythrinidae: Hoplias malabaricus, Hoplerythrinus unitaeniatus – UFSCar / PPGGEv / FAPESP.

V.4. MSc Dissertation by Margareth Maria de Oliveira Correa (1995): Contribuição à citotaxonomia dos Scorpaeniformes (Osteichthyes-Teleostei). Estudos citogenéticos em espécies do litoral do Rio de Janeiro, Brasil / Contribution to the cytotaxonomy of Scorpaeniformes (Osteichthyes-Teloestei). Cytogenetic studies in coastal species from Rio de Janeiro, Brazil. Taxa analyzed – Order Scorpaeniformes–Family Dactylopteridae: Dactylopterus volitans (Linnaeus, 1758); Family Scorpaenidae: Scorpaena brasiliensis Cuvier, 1829; S. isthmensis Meek & Hildebrand, 1928; Family Triglidae: Prionotus punctatus (Block, 1793) – UFRJ / PPGCB-Ecol / CNPq

V.5. PhD Thesis by Carlos Suetoshi Miyazawa (1997): Citogenética de caracídeos do rio Paraguai. Análises citotaxonômica-evolutivas e considerações biogeográficas / Cytogenetics of characids from the Paraguay River. Cytotaxonomic and evolutionary analyses and biogeographical considerations. Taxa analyzed: Order Characiformes – Family Acestrorhynchidae: Acestrochynchus pantaneiro Menezes, 1992; Family Serrasalmidae: Metynnis maculatus (Kner, 1858), Myleus levis (Eigenmann & McAtee, 1907) (cited as Myloplus levis); Family Characidae: Poptella paraguayensis (Eigenmann,1907), Tetragonopterus argenteus (Cuvier, 1816), Roeboides sp.; Astyanax cf. abramis (Jenyns, 1842), Markiana nigripinnis (Perugia, 1891), Gymnocorymbus ternetzi (Boulenger, 1895), Moenkhausia dichroura (Kner, 1858); Family Triportheidae: Triportheus sp., Family Gasteropelecidae: Thoracocharax stellatus (Kner, 1858) – UFSCar / PPGGEv / CAPES

V.6. PhD Thesis by Paulo Cesar Venere (1998): Diversificação cariotípica em peixes do médio rio Araguaia, com ênfase em Characiformes e Siluriformes (Teleostei, Ostariophysi) / Karyotype diversification in fishes from the middle Araguaia River, with emphasis on Characiformes and Siluriformes (Teleostei, Ostariophysi). Taxa analyzed: Order Characiformes – Family Anostomidae: Leporinus friderici, L. trifasciatus Steindachner, 1876, Leporinus sp., Leporinus aff. brunneus Myers, 1950, Laemolyta petiti Géry, 1964; Family Prochilodontide: Prochilodus nigricans; Family Chilodontidae: Caenotropus labyrinthicus (Kner, 1858); Family Curimatidae: Steindachnerina amazônica (Steindachner, 1911), S. gracilis Vari & Williams Vari, 1989, Curimata inornata Vari, 1989, Psectrogaster amazônica Eigenmann & Eigenmann, 1889; Family Hemiodontidae: Hemiodus aff. ternetzi Myers, 1927, H. unimaculatus (Bloch, 1794), Bivibranchi avelox (Eigenmann & Myers, 1927); Family Characidae: Roeboides sp., Galeocharax gulo (Cope, 1870), Exodon paradoxus Müller & Troschel, 1844; Order Siluriformes – Family Doradidae: Hassar wilderi Kindle, 1895, Leptodoras acipenserinus (Günther, 1868), Opsodoras sp., Rinodoras sp.; Family Auchenipteridae: Trachelyopterus aff. galeatus (cited as Parauchenipterus aff. galeatus); Family Callichthyidae: Megalechis thoracata (Valenciennes, 1840), cited as Megalechis personata (Ranzani, 1841); Family Gymnotidae: Gymnotus aff. carapo Linnaeus, 1758 – UFSCar / PPGGEv / CAPES

V.7. MSc Dissertation by Paulo Roberto Antunes de Mello Affonso (2000): Caracterização citogenética de peixes de recifes de corais das famílias Pomacanthidae e Chaetodontidae (Perciformes) / Cytogenetic characterization of coral reef fishes of the Pomacanthidae and Chaetodontidae families (Perciformes). Taxa analyzed: Order Perciformes – Family Pomacanthidae: Centropigea urantonotus Burgess, 1974, Holocanthus ciliaris (Linnaeus, 1758), H. tricolor (Block, 1795), Pomacanthus arcuatus (Linnaeus, 1758), P. paru (Block, 1787); Family Chaetodontidae: Chaetodon striatus Linnaeus, 1758 – UFSCar / PPGGEv / CNPq

V.8. MSc Dissertation by Marilza Barbosa de Almeida Marques (2002): Estudos citogenéticos em Conorhynchus conirostris e Lophiosilurus alexandri (Siluriformes), espécies endêmicas do rio São Francisco / Cytogenetic studies in Conorhynchus conirostris and Lophiosilurus alexandri (Siluriformes), endemic species from the São Francisco River.Taxa analyzed: Order Siluriformes – Family Pimelodidae: C. conirostris (Valenciennes, 1840); Family Pseudopimelodidae: L. alexandri Steindachner, 1876 – UFSCar / PPGGEv

V.9. MSc Dissertation by Karine Frehner Kavalco (2003): Contribuição citogenética à análise da biodiversidade da ictiofauna das nascentes do rio Paraitinga. / Cytogenetic contribution to the biodiversity analysis of the fish fauna from the headwaters of the Paraitinga River. Taxa analyzed: Order Siluriformes – Family Loricariidae: Harttia loricariformes Steindachner, 1877, Neoplecostomus microps (Steindachner, 1877), Hypostomus affinis (Steindachner, 1877), Upsilodus sp.; Order Characiformes – Family Characidae: Astyanax scabripinnis, A. parahybae Eigenmann, 1908, A. intermedius Eigenmann, 1908, A. giton Eigenmann, 1908, Oligosarcus hepsetus – UFSCar / PPGGEv / FAPESP

V.10. PhD Thesis by Liano Centofante (2003): Citogenética comparativa entre ictiofaunas isoladas por um divisor de águas em regiões limítrofes de duas bacias hidrográficas na Serra da Mantiqueira / Comparative cytogenetics of fish fauna from neighboring regions of two hydrographic basins isolated by a watershed in the Serra da Mantiqueira. Taxa analyzed: Order Siluriformes – Family Loricariidae: Harttia carvalhoi Miranda Ribeiro, 1939; Family Heptapteridae: Rhamdia sp.; Order Characiformes – Family Characidae – Astyanax parahybae, A. fasciatus, Hyphessobrycon anisitsi (Eigenmann, 1907); Family Parodontidae: Parodon nasus (cited as P. tortuosus), P. moreirai Ingenito & Buckup, 2005 (cited as Parodon sp); Family Crenuchidae: Characidium gomesi Travassos, 1956, C. cf. zebra Eigenmann, 1909, C. lauroi Travassos, 1949, C. cf. alipioi Travassos, 1955 – UFSCar / PPGGEv / CNPq / CAPES

V.11. MSc Dissertation by Caroline Garcia (2005): Contribuições aos estudos citogenéticos em algumas espécies de cinco famílias de Siluriformes do rio São Francisco / Contributions to cytogenetics of some species of three Siluriformes families from the São Francisco River. Taxa analyzed: Order Siluriformes – Family Auchenipteridae: Trachelyopterus galeatus (cited as Paurachenipterus galeatus), T. leopardinus (Borodin, 1927) cited as Paurachenipterus leopardinus (Borodin, 1927); Family Doradidae: Fransciscodoras marmoratus (Lütken, 1874); Family Heptapteridae: Rhamdia quelen; Family Pimelodidae: Pimelodus fur (Lütken, 1874), P. maculatus Lacepède, 1803, Pimelodus sp., Zungaru zungaru (Humboldt, 1821) cited as Pseudopimelodus zungaru (Humboldt, 1821) – UFSCar / PPGGEv / FAPESP

V.12. PhD Thesis by Marcelo Ricardo Vicari (2006): Diversidade de peixes residentes em cabeceiras de rios. Uma abordagem cromossômica em três diferentes biomas aquáticos da região Sul do Brasil / Fish diversity from river headwaters. A chromosomal approach in three biomes from South Brazil. Taxa analyzed: Order Siluriformes – Family Callichthyidae: Corydoras paleatus (Jenyns, 1842), C. ehrhardti Steindachner, 1910; Order Characiformes – Family Parodontidae: Apareiodon sp.; Family Characidae: Astyanax scabripinnis, A. janeiroensis Eigenmann, 1908; Family Crenuchidae: Characidium cf. gomesi; Order Perciformes – Family Cichlidae: Geophagus brasiliensis, Australoheros facetus (Jenyns, 1842) cited as Cichlasoma facetum (Jenyns, 1842) – UFSCar / PPGGEv / FAPESP

V.13. MSc Dissertation by Maressa Ferreira Neto (2008): Análise citogenética em algumas espécies de peixes de uma região divisora de águas entre riachos de bacias hidrográficas distintas / Cytogenetic analysis in fish species from a dividing water region of streams belonging to different river basins. Taxa analyzed: Order Characiformes – Family Characidae: Astyanax altiparanae, A. fasciatus, Moenkausia sancta filomenae; Family Curimatidae: Cyphocarax modestus; Family Prochilodontidae: Prochilodus lineatus; Order Gymnotiformes – Family Gymnotidae: Gymnotus carapo Linnaeus, 1758; Family Sternopygidae: Eigenmannia sp.; Order Perciformes – Family Cichlidae: Geophagus brasiliensis – UFSCar / PPGGEv / CAPES / CNPq

V.14- PhD Thesis by Elisangela Bellafronte da Silva (2009): Citogenética clássica e molecular em peixes Neotropicais. Estudos comparativos entre bacias hidrográficas com ênfase em região de transposição de rio / Conventional and molecular cytogenetics in Neotropical fishes. Comparative studies among river basins with emphasis on a river transposition region. Taxa analyzed: Order Gymnotiformes – Family Gymnotidae: Gymnotus carapo, G. silvius Albert & Fernandes-Matioli, 1999; Family Sternopygidae: Eigenmannia virescens (Valenciennes, 1836), Eigenmania sp. – UFSCar / PPGGEv / CNPq / CAPES

V.15. PhD Thesis by Daniel Luis Zanella Kantek (2010): Citogenética de espécies de Siluriformes da região de transposição do rio Piumhi (MG) / Cytogenetics of Siluriformes species from the transposition region of the Piumhi River (MG). Taxa analyzed: Order Siluriformes – Family Auchenipteridae: Trachelyopterus galeatus (cited as Parauchenipterus galeatus); Family Pimelodidae: Pimelodus pohli Ribeiro & Lucena, 2006; Family Heptapteridae: Imparfinis schubarti (Gomes, 1956); Cetopsorhamdia iheringi Schubart & Gomes, 1959, Pimelodella vittata (Lütken, 1874), Rhamdia sp. A, Rhamdia sp. B, Rhamdiopsis cf. microcephala (Lütken, 1874), Family Trichomycteridae: Trichomycterus brasiliensis Lütken, 1874 – UFSCar / PPGGEv / CNPq / CAPES

Final remarks

Two general trends were found among the Neotropical fishes regarding the karyotype evolution. In fact, a significant number of families were characterized by conservative karyotypes, in contrast to others with highly divergent ones. Parodontidae, Anostomidae and Prochilodontidae species, for example, exhibit relatively homogeneous karyotypes at the macrostructural level, contrasting with the high chromosomal diversity found among Erythrinidae and Characidae species (Bertollo et al. 1986). It is noteworthy that karyotype features appear to be correlated with their lifestyle and ecological habits, since more dispersive and migratory species usually disclose more stable karyotypes when compared to those with low vagility and organized in small local populations (Bertollo et al. 1986; Blanco et al.2011; Oliveira et al. 2015). Indeed, many local populations were evidenced as having particular karyotypes, pointing to a large number of species complexes and the cryptic biodiversity present in the Neotropical fish fauna, as especially highlighted in the Characidae and Erythrinidae families (Moreira-Filho and Bertollo1991; Bertollo 2007; Cioffi et al. 2012a). In fact, many sympatric, or even syntopic, karyomorphs do not indicate hybridization at the chromosomal level, indicating the absence of gene flow among them and, consequently, corroborating the status of species complexes for some current nominal species (Bertollo et al. 2000).

Reports on chromosomal polymorphisms (Giuliano-Caetano and Bertollo 1988; Vicari et al. 2003; Pazza et al. 2006, 2008; Mariotto et al. 2009), natural triploidy (Morelli et al. 1983; Venere and Galetti Jr. 1985; Giuliano-Caetano and Bertollo 1990; Centofante et al. 2001; Garcia et al. 2003) and broad karyotype evolution by centric fissions (Feldberg et al. 1993), were also emphasized for distinct fish groups. Noteworthy is also the cytogenetic contribution for biogeographical analyzes, clarifying the current fish fauna distribution in some important Brazilian river basins. In this sense, native species, as well as invasive ones due to dispersal events or breakdown of geographic isolation, were clearly identified by chromosomal investigations (Peres et al. 2009; Blanco et al. 2010; Silva et al. 2010; Perez et al. 2012). As a significant example, Astyanax bimaculatus from two important Brazilian watersheds, namely the São Francisco and Grande rivers share similar morphological characteristics. However, specimens from each one of such rivers were well characterized by their particular chromosomal features. In the early 1960s, a tributary of the Grande River was artificially transposed into the São Francisco river basin, with the consequent breakdown of the geographic isolation of their respective fish fauna. As a consequence, cytogenetic investigation was able to identify representatives of A. bimaculatus from both basins living in sympatry in the transposition region, as well as individuals with intermediate karyotypes in view of the resulting secondary hybrid zone in such region (Peres et al. 2012).

Over the years, a particular emphasis has been directed on the characterization and the evolutionary process of sex chromosomes. A larger number of Neotropical fish species with well differentiated sex chromosomes occur in comparison to other world regions (Moreira-Filho et al. 1993), carrying simple (ZZ/ZW, XX/XY) and multiple (X1X1X2X2/X1X2Y, XX/XY1Y2, ZZ/ZW1W2) sex chromosome systems (Centofante et al. 2002; Cioffi et al. 2012b), in addition to some others disclosing a nascent or early stage of differentiation (Cioffi and Bertollo 2010; Freitas et al. in press). Usually, sex chromosomes occur as a particular feature for some species within a specific fish group, as exemplified in the Erythrinidae, Parodontidae, Anostomidae and Crenuchidae families (Galetti Jr. et al. 1981, 1995; Moreira-Filho et al. 1985, 1993; Molina et al. 1998; Centofante et al. 2001, 2003; Bertollo et al. 2000; Bertollo 2007; Vicari et al. 2008; Cioffi et al. 2013). As a singular exception, all species of the Triportheus genus (Triportheidae) share a same ZZ/ZW sex chromosome system (Artoni et al. 2001, 2002; Diniz et al. 2008), constituting a special model to investigate the evolution of the sex chromosomes among lower vertebrates. The modern molecular cytogenetics was a key step for understanding the evolutionary process of the sex chromosomes among fishes. This way, the significative role of several classes of repetitive DNAs in the differentiation path of the sex pair, both at its inicial stage (Cioffi and Bertollo 2010; Freitas et al. in press) or more advanced ones (Cioffi et al. 2010, 2011a, b, 2012b; Yano et al. 2014a, b), was clearly highlighted. Notably, whole chromosome painting (WCP) and comparative genomic hybridization (CGH) were able to demonstrate that fish sex chromosomes can have an independent origin even among closely related species (Cioffi et al. 2011c, d; 2013) or, alternatively, a common origin within particular monophyletic groups (Yano et al. 2016).

Besides sex chromosomes, supernumerary or B chromosomes comprise another special feature that stands out in the Neotropical fishes. Such additional elements can be i) as large as the biggest chromosome pair of the karyotype, ii) medium-sized, iii) very small iv) or even characterized as microchromosomes. Two particular models, represented by Astyanax scabripinnis and Prochilodus lineatus, have been subjected to continuous analyses over years. A. scabripinnis has some morphologically differentiated B chromosomes, although a large and similar in size to the first chromosome pair of the karyotype is the most frequent one (Moreira-Filho et al. 2004). Its origin as an isochromosome was demonstrated by both standard and molecular cytogenetic, including meiotic data (Vicente et al. 1996; Mestriner et al. 2000). A continuous population analysis showed that Bs display a particular dynamism related to environmental and sex conditions in A. scabripinnis. Indeed, it is noteworthy their gradual decrease in frequency from higher to lower altitudes, until the complete absence in the latter ones (Néo et al. 2000). In addition, an evident sex ratio distortion is associated with these chromosomes. In fact, the mean number of Bs in males is only about 27% of the female one, which matches the male population frequency (Vicente et al. 1996), suggesting that B chromosomes may play a role on sex determination in this species.

Constrasting with A. scabripinnis, P. lineatus bears a number of very small B chromosomes (Pauls and Bertollo 1983), which also have an intraspecific origin as indicated by molecular cytogenetic and chromosomal banding (Jesus et al. 2003; Artoni et al. 2006). Remarkably, the frequency of these chromosomes was changed over years in close association with their transmission dynamics. In this sense, the average number of Bs increased twice along a time period indicating an accumulation mechanism, but without evidences of additional changes after that. Significantly, the mitotic instability of Bs declined almost 400 times during this same period, reaching a stable transmission. This way, it is likely that the mitotic stabilization was a key process for neutralizing the accumulation process (Cavallaro et al. 2000).

Nowadays, many of such issues so far investigated, in addition to additional approaches on fish biology, are going in advancing in the light of chromosomal, cytogenomic and molecular methodologies currently available. It is hoped that these procedures can provide additional and important advances for the Neotropical fish fauna evolutionary history.

Acknowledgments

We would like to thank the Brazilian agencies Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for financial support in all these years. We are grateful to all students and staff who were part of the Laboratory of Fish Cytogenetics and thus responsible for the MSc and PhD theses listed here. Thanks also to Brazilian and international colleagues for collaborations in several of our researches and published articles.

References

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