Research Article |
Corresponding author: Tatiana Demidova ( demidovatanya@mail.ru ) Academic editor: Rafael Noleto
© 2018 Eugene Krysanov, Tatiana Demidova.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Krysanov E, Demidova T (2018) Extensive karyotype variability of African fish genus Nothobranchius (Cyprinodontiformes). Comparative Cytogenetics 12(3): 387-402. https://doi.org/10.3897/CompCytogen.v12i3.25092
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Karyotypes of 65 species of the genus Nothobranchius Peters, 1868 were reviewed and of those 35 examined first time. The results of present study have shown that fishes of the genus Nothobranchius possessed highly diverse karyotypes. The diploid chromosome number (2n) ranged from 16 to 50. The most frequent 2n was 2n = 36 (in 35 species) while the second one 2n = 38 (in 13 species). Proportion of biarmed chromosomes varied from 0 to 95% between species. Diploid chromosome number variability apparently exists as a result of chromosomal fusions or fissions and extensive karyotypic formula alterations promoting by inversions. Multiple sex chromosomes of system X1X1X2X2/X1X2Y type were found only in karyotypes of 5 species. The extensive karyotype variability, unusual for teleosts, of genus Nothobranchius can be likely associated with the characteristics of its life cycle and inhabiting under unstable environment of East African savannah temporal pools.
African killifishes, fish cytogenetics, karyotype differentiation
More than a half of teleost fish examined had diploid chromosomes number 2n = 48-50 (
Killishes of the genus Nothobranchius Peters, 1868 comprise 76 valid species (
Phylogenetic data based on molecular markers demonstrated that the genus Nothobranchius is a monophyletic assemblage and it includes four geographically separated clades (
Karyotypes of 30 species were described earlier and high karyotype variability was revealed (summarized in
The aim of the study was to characterize karyotype diversity of the genus Nothobranchius and conduct cytogenetic comparison among different species. In present study, we i) reviewed all available data dealing with cytogenetic study of Nothobranchius species and ii) analyzed 35 other species not studied as yet for 2n and karyotype composition using conventional cytogenetic protocol.
Individuals of Nothobranchius species were collected either from wild populations of East Africa or provided by killifish hobbyists. Geographical data and coordinates are given in supplements.
Chromosomes were prepared according to the method of
Slides were air dried and then stained with 2% Giemsa solution in phosphate buffer a (pH 6.8) for 10 min. Chromosomes were analyzed under microscope “AxioImager” Karl Zeiss (Germany) equipped with CCD camera and “KaryoImage” Metasystems Software (Germany). Chromosome morphology was determined according to
Statistical analysis was done using IBM SPSS 20 package. Data were tested for normality. Regression between the rate of biarmed chromosomes and diploid chromosome number, and the Spearman correlation were calculated.
Karyological data of 65 species of the genus Nothobranchius and two species of sister taxa Fundulosoma Ahl, 1924 and Pronothobranchius Radda, 1969 (according to Costa, 2018) are provided in Table
As evident, the number and morphology of chromosomes varied widely between karyotypes of analyzed species 2n ranged from 16 to 50 where the most frequent was 2n = 36 and second 2n = 38 (Fig.
Our data showed that the proportion of biarmed chromosomes in the karyotype of the species varied widely from 0 to 95%. Regression between the rate of biarmed chromosomes and 2n was y = -1.607x + 96.863, R2 = 0.29 and the Spearman correlation was Rs = -0.181 (Fig.
Histogram of the distribution of the diploid chromosome number (2n) in the genus Nothobranchius.
Scatter-plot of a diploid chromosome number (2n) and proportion of metacentric chromosomes with overall regression line. The diameter and color of circle indicate number of species from 1 to 5.
Karyotypes of two species belonging to this subgenus were described by
The only species in the subgenus N. virgatus has 2n = 32 uniarmed chromosomes (NF = 32).
Four species N. furzeri, N. kadleci, N. orthonotus and N. kuhntae possesed the 2n = 38. Biarmed elements dominated in karyotypes of N. kadleci (NF = 62) and N. furzeri (NF = 60), and uniarmed chromosomes dominated in karyotypes of N. kuhntae (NF = 52) and N. orthonotus (NF = 48).
The karyotype of N. pienaari had 2n = 24 and most of chromosomes were uniarmed (NF = 42).
The lowest 2n was found in two closely related species N. rachovii (2n = 16, NF = 30) and N. krysanovi (2n = 18, NF = 34). Most of chromosomes in their karyotypes were metacentric elements with only one pair of acrocentric chromosomes as described earlier (
The only species in the subgenus N. ocellatus has 2n = 30 and uniarmed chromosomes dominated in the karyotype (NF = 40).
There are species in the subgenus possessing 2n higher than 38. The highest 2n = 49/50 among studied species was discovered in N. brieni (
N. milvertzi had the 2n = 38 with karyotype formulae 10m+6sm+22st/a (NF = 54).
The rest species in subgenus had diploid chromosome numbers 2n = 36 (see table 1). The ratio of uniarmed and biarmed chromosomes differed among species. The most uniarmed chromosomes number was found for N. boklundi (NF = 46) which had 26 uniarmed and 10 biarmed chromosomes (6m+4sm+26st/a) and the least uniarmed chromosomes number was found for N. neumanni (NF = 70) with only two uniarmed and 34 biarmed chromosomes (18m+16sm+2st/a). Other species had karyotypes with uniformly decreasing numbers of uniarmed chromosomes from 24 to 4 and numbers of biarmed chromosomes increased correspondingly.
Eight species had the 2n = 38 with different ratio of uniarmed and biarmed chromosomes. Karyotypes of three species N. fuscotaeniatus, N. geminus and N. luekei possessed 36 uniarmed and only two biarmed chromosomes (NF = 40) while N. vosseleri (NF = 60) karyotype had only 16 uniarmed and 22 biarmed chromosomes. Other species had karyotypes with uniformly decreasing numbers of uniarmed chromosomes from 34 to 26 and numbers of biarmed chromosomes increased correspondingly. Females of N. janpapi had more chromosome than males 2n = 38/37 and multiple sex chromosome system X1X1X2X2/X1X2Y type was revealed.
The modal diploid chromosome number 2n = 36 was found for 14 species. Four sister species N. albimarginatus, N. cardinalis, N. rubripinnis and N. ruudwildekampi had similar karyotypes with 34 uniarmed and only 2 biarmed chromosomes (NF = 38). Karyotypes of three species N. eggersi, N. korthausae, and N. wattersi possesed 32 uniarmed and 4 biarmed chromosomes (NF = 40). Females of N. guentheri had more chromosome than males 2n = 36/35 and multiple sex chromosome system X1X1X2X2/X1X2Y type was revealed.
Karyotypes of other species had uniformly decreasing numbers of uniarmed chromosomes from 30 to 14 and numbers of biarmed chromosomes increased correspondingly.
Two species N. foerschi and N. jubbi had the 2n = 34 with 22 uniarmed and 12 biarmed chromosomes (NF = 46).
Only one species N. kilomberoensis possessed the 2n = 32 with karyotype formulae 8m+6sm+18st/a and NF = 46.
In karyotypes of two species N. annectens (2n = 28, NF = 36) and N. lourensi (2n = 27/28, NF = 34) uniarmed chromosomes dominated over biarmed ones. N. lourensi possessed multiple sex chromosome system X1X1X2X2/X1X2Y type.
N. flammicomantis possessed the lowest diploid numbers in the subgenus 2n = 20. The karyotype of N. flammicomantis consisted mainly of biarmed chromosomes with one pair of uniarmed chromosomes (NF = 38).
Diploid chromosome numbers (2n), fundamental numbers (NF) and karyotype structures of analysed species. [*sex chromosome system of X1X1X2X2/X1X2Y type]
Species | 2n | NF | Karyotype structure | Number of specimens karyotyped | References |
---|---|---|---|---|---|
Subgenus Cynobranchius Costa, 2018 | |||||
N. microlepis (Vinciguerra, 1897) | 24 | 26 | 2m+22st/a |
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N. fasciatus Wildekamp & Haas, 1992 | 34 | 46 | 12msm+22st/a |
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Subgenus Plesiobranchius Costa, 2018 | |||||
N. virgatus Chambers, 1984 | 32 | 32 | 32st/a | 2♀/2♂ | This study |
Subgenus Nothobranchius Peters, 1868 | |||||
N. furzeri Jubb, 1971 | 38 | 60 | 14m+8sm+16st/a | 4♀/5♂ | This study, |
N. kadleci Reichard, 2010 | 38 | 62 | 16m+8sm+14st/a | 3♀/5♂ | This study |
N. krysanovi Shidlovskiy, Watters & Wildekamp, 2010 | 18 | 34 | 8m+8sm+2st/a | 3♀/5♂ | This study, |
N. kuhntae (Ahl, 1926) | 38 | 52 | 6m+8sm+24st/a | 1♀/1♂ | This study |
N. orthonotus (Peters, 1844) | 38 | 48 | 8m+2sm+28st/a | 2♀/3♂ | This study, |
N. pienaari Shidlovskiy, Watters & Wildekamp, 2010 | 34 | 42 | 6m+2sm+26st/a | 4♀/4♂ | This study, |
N. rachovii Ahl, 1926 | 16 | 30 | 8m+6sm+2st/a | 10♀/12♂ | This study, |
Subgenus Paranothobranchius Seegers, 1985 | |||||
N. ocellatus Seegers, 1985 | 30 | 40 | 2m+8sm+20st/a | 2 larvae | This study |
Subgenus Zononothobranchius Radda, 1969 | |||||
N. boklundi Valdesalici, 2010 | 36 | 46 | 6m+4sm+26st/a | 2♀/3♂ | This study |
N. brieni Poll, 1938* | 50♀ 49♂ |
50♀ 50♂ |
♀50st/a ♂1m+48st/a |
4♀/5♂ | This study, |
N. capriviensis Watters, Wildekamp & Shidlovskiy, 2015 | 36 | 58 | 4m+18sm+14st/a | 1♀/2♂ | This study |
N. chochamandai Nagy, 2014 | 36 | 64 | 18m+10sm+8st/a | 5♀/7♂ | This study |
N. flagrans Nagy, 2014 | 36 | 48 | 10m+2sm+24st/a | 3♀/4♂ | This study |
N. hassoni Valdesalici & Wildekamp, 2004 | 36 | 52 | 8m+8sm+20st/a | 3♀/5♂ | This study |
N. ivanovae Valdesalici, 2012 | 36 | 64 | 22m+6sm+8st/a | 3♀/3♂ | This study |
N. kafuensis Wildekamp & Rosenstock, 1989 | 36 | 66 | 8m+22sm+6st/a | 1♀/2♂ | This study, |
N. kardashevi Valdesalici, 2012 | 36 | 52 | 6m+10sm+20st/a | 2♀/3♂ | This study, |
N. malaissei Wildekamp, 1978 | 48 | 62 | 4m+10sm+34st/a | 3♀/3♂ | This study |
N. milvertzi Nagy, 2014 | 38 | 54 | 10m+6sm+22st/a | 4♀/4♂ | This study |
N. neumanni (Hilgendorf, 1905) | 36 | 70 | 18m+16sm+2st/a | 4♀/5♂ | This study |
N. nubaensis Valdesalici, Bellemans, Kardashev & Golubtsov, 2009 | 36 | 62 | 14m+12sm+10st/a | 3♀/4♂ | This study, |
N. polli Wildekamp, 1978 | 36 | 60 | 10m+14sm+12st/a | 2♀/3♂ | This study |
N. robustus Ahl, 1935 | 36 | 58 | 4m+18sm+14st/a | 1♂ | This study, |
N. rosenstocki Valdesalici & Wildekamp, 2005 | 36 | 62 | 14m+12sm+10st/a | 1♀/2♂ | This study |
N. rubroreticulatus Blache & Miton, 1960 | 36 | 58 | 12m+10sm+14st/a | 2♀/2♂ | This study |
N. seegersi Valdesalici & Kardashev, 2011 | 36 | 56 | 8m+12sm+16st/a | 4♀/4♂ | This study |
N. steinforti Wildekamp, 1977 | 36 | 56 | 10m+10sm+16st/a | 2♀/3♂ | This study, |
N. streltsovi Valdesalici, 2016 | 36 | 48 | 6m+6sm+24st/a | 3♀/3♂ | This study |
N. symoensi Wildekamp, 1978 | 36 | 68 | 20m+12sm+4st/a | 2♀/3♂ | This study |
N. taeniopygus Hilgendorf, 1891 | 36 | 66 | 14m+16sm+6st/a | 4♀/5♂ | This study |
N. ugandensis Wildekamp, 1994 | 36 | 58 | 8m+14sm+14st/a | 3♀/3♂ | This study, |
Subgenus Adiniops Myers, 1924 | |||||
N. albimarginatus Watters, Wildekamp & Cooper, 1998 | 36 | 38 | 2m+34st/a | 3♀/5♂ | This study |
N. annectens Watters, Wildekamp & Cooper, 1998 | 28 | 36 | 8m+20st/a | 5♀/7♂ | This study |
N. cardinalis Watters, Cooper & Wildekamp, 2008 | 36 | 38 | 2m+34st/a | 8♀/12♂ | This study |
N. eggersi Seegers, 1982 | 36 | 40 | 4m+32st/a | 5♀/6♂ | This study, |
N. elongatus Wildekamp, 1982 | 38 | 48 | 8m+2sm+28st/a | 1♀/2♂ | This study, |
N. flammicomantis Wildekamp, Watters & Sainthouse, 1998 | 20 | 38 | 18m+2st/a | 5♀/8♂ | This study |
N. foerschi Wildekamp & Berkenkamp, 1979 | 34 | 46 | 10m+2sm+22st/a | 3♀/5♂ | This study, |
N. fuscotaeniatus Seegers, 1997 | 38 | 40 | 2sm+36st/a | 3♀/6♂ | This study |
N. geminus Wildekamp, Watters & Sainthouse, 2002 | 38 | 40 | 2sm+36st/a | 2♀/3♂ | This study |
N. guentheri (Pfeffer, 1893) * | 36♀ 35♂ |
40♀ 39♂ |
♀2m+2sm+32st/a ♂2m+2sm+31st/a |
5♀/7♂ | This study, |
N. hengstleri Valdesalici, 2007 | 38 | 42 | 2m+2sm+34st/a | 3♀/5♂ | This study, |
N. interruptus Wildekamp & Berkenkamp, 1979 | 36 | 50 | 8m+6sm+22st/a | 2♀/3♂ | This study |
N. janpapi Wildekamp, 1977* | 38♀ 37♂ |
48♀ 49♂ |
♀2m+8sm+28st/a ♂3m+9sm+25st/a |
5♀/7♂ | This study, |
N. jubbi Wildekamp & Berkenkamp, 1979 | 34 | 46 | 4m+8sm+22st/a | 2♀/3♂ | This study, |
N. kilomberoensis Wildekamp, Watters & Sainthouse, 2002 | 32 | 46 | 8m+6sm+18st/a | 2♀/4♂ | This study |
N. kirki Jubb, 1969 | 36 | 50 | 2m+12sm+22st/a | 1♀/2♂ | This study, |
N. korthausae Meinken, 1973 | 36 | 40 | 4m+32st/a | 3♀/5♂ | This study, |
N. lourensi Wildekamp, 1977* | 28♀ 27♂ |
34♀ 34♂ |
♀6m+22st/a ♂7m+20st/a |
2♀/3♂ | This study |
N. lucius Shidlovskiy, Watters & Wildekamp, 2010 | 36 | 58 | 6m+16sm+14st/a | 2♀/3♂ | This study, |
N. luekei Seegers, 1984 | 38 | 40 | 2m+36st/a | 2♀/2♂ | This study |
N. makondorum Shidlovskiy, Watters & Wildekamp, 2010 | 36 | 50 | 6m+8sm+22st/a | 3♀/4♂ | This study, |
N. melanospilus (Pfeffer, 1896) | 38 | 50 | 4m+8sm+26st/a | 3♀/4♂ | This study, |
N. palmqvisti (Lönnberg, 1907) | 36 | 42 | 6m+30st/a | 2♀/2♂ | This study, |
N. patrizii (Vinciguerra, 1897) | 36 | 52 | 4m+12sm+20st/a | 2♀/2♂ | This study, |
N. rubripinnis Seegers, 1986 | 36 | 38 | 2m+34st/a | 2♀/2♂ | This study |
N. ruudwildekampi Costa, 2009 | 36 | 38 | 2m+34st/a | 3♀/4♂ | This study |
N. vosseleri Ahl, 1924 | 38 | 60 | 6m+16sm+16st/a | 2♀/3♂ | This study |
N. wattersi Ng'oma, Valdesalici, Reichwald & Cellerino, 2013 | 36 | 40 | 4m+32st/a | 2♀/2♂ | This study, |
Unrecognized species | |||||
N. ditte Nagy, 2018* | 40♀ 39♂ |
♀64 ♂64 |
♀12m+12sm+16st/a ♂13m+12sm+14st/a |
3♀/4♂ | This study |
N. torgashevi Valdesalici, 2015 | 36 | 46 | 6m+4sm+26st/a | 3♀/4♂ | This study, |
N. usanguensis Wildekamp, Watters & Shidlovskiy, 2014 | 36 | 54 | 6m+12sm+18st/a | 1♀/2♂ | This study |
Genus Fundulosoma Ahl, 1924 | |||||
Fundulosoma thierryi (Ahl, 1924) * | 44♀ 43♂ |
46♀ 45♂ |
♀2m+42st/a ♂1m+1sm+41st/a |
2♀/4♂ | This study |
Genus Pronothobranchius Radda, 1969 | |||||
Pronothobranchius kiyawensis Ahl, 1928 | 28 | 30 | 2m+26st/a | 2♂ | This study |
Karyotypes of 65 species of the genus Nothobranchius were overviewed and those of 35 species reported here for first time.
The results of present work have shown that representatives of the genus Nothobranchius possess a highly diverse karyotype. The 2n ranged from 16 to 50. The most frequent was 2n = 36 (35 species) and the second was 2n = 38 (13 species). similar karyotype diversity was found only for one closely related genus Aphyosemion Myers, 1924 among the family Cyprinodontiformes (
It has been shown that karyotypes of teleost fish consisted mainly of uniarmed or biarmed chromosomes (
Most of the studied species did not display morphologically distinguished sex chromosomes. Sex chromosomes were found only in six species, namely N. guentheri (
Subgenera Cynobranchius and Plesiobranchius form basal Northern phylogenetic clade (sensu
Subgenus Nothobranchius corresponds well with the Southern clade (sensu
Reductions of diploid chromosomes number by fusions were probably characteristic of species with 2n lower 38. Biarmed chromosomes dominated in the karyotypes of species (N. rachovii and N. krysanovi) with the lowest diploid numbers (16 and 18) in the genus.
Only the species N. ocellatus from the subgenus Paranothobranchius with a distinctive karyotype structure is included in the Southern clade.
Subgenus Zononothobranchius corresponds well with the Inland clade (sensu
Two species N. malaissei (2n=48), N. brieni (2n=49/50) had the highest diploid chromosome numbers among all species of the genus and high percent of uniarmed chromosomes.
Therefore, karyotype evolution of the subgenus proceeded mainly by pericentric inversions or rarest chromosome fusions (or fissions).
Subgenus Adiniops corresponds well with the Coastal clade (sensu
Thus, two main trends were revealed in chromosome evolution of the genus: chromosome fusions (or rare fissions) and pericentric inversions.
According to our data species of the genus Nothobranchius possess high variability of karyotype structure and diploid chromosome numbers. Such variability exists as a result of chromosome fusions or fissions and pericentric inversion, which is especially characteristic for the species with 2n equal 36 and 38. Centromere fusion apparently took place in formation of karyotypes with reduced 2n (less than 36).
In our opinion, variability of Nothobranchius karyotypes is associated with the characteristics of its life cycle and inhabiting in ephemeral partly isolated pools of East African savannah. Karyotype flexibility of Nothobranchius individuals may play adaptive role for survival under unstable conditions.
This work was partially supported by research grants of Russian foundation for Basic Research № 16-04-01102 and № 17-04-01899. We are grateful to A. Nikiforov, S. Streltsov, S. Torgashov, B. Nagy and R. Wildekamp for collecting, keeping and providing fishes. We also thank Petr Rab, Viktor Vasiliev and other reviewers for providing feedback that greatly improved the quality of the manuscript.