Research Article |
Corresponding author: Giovana Augusta Torres ( gatorres@dbi.ufla.br ) Academic editor: Viktoria Shneyer
© 2016 Ludmila Cristina Oliveira, Maria do Socorro Padilha de Oliveira, Lisete Chamma Davide, Giovana Augusta Torres.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Oliveira LC, de Oliveira MSP, Davide LC, Torres GA (2016) Karyotype and genome size in Euterpe Mart. (Arecaceae) species. Comparative Cytogenetics 10(1): 17-25. https://doi.org/10.3897/CompCytogen.v10i1.5522
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Euterpe (Martius, 1823), a genus from Central and South America, has species with high economic importance in Brazil, because of their palm heart and fruits, known as açaí berries. Breeding programs have been conducted to increase yield and establish cultivation systems to replace the extraction of wild material. These programs need basic information about the genome of these species to better explore the available genetic variability. The aim of this study was to compare E. edulis (Martius, 1824), E. oleracea (Martius, 1824) and E. precatoria (Martius, 1842), with regard to karyotype, type of interphase nucleus and nuclear DNA amount. Metaphase chromosomes and interphase nuclei from root tip meristematic cells were obtained by the squashing technique and solid stained for microscope analysis. The DNA amount was estimated by flow cytometry. There were previous reports on the chromosome number of E. edulis and E. oleracea, but chromosome morphology of these two species and the whole karyotype of E. precatoria are reported for the first time. The species have 2n=36, a number considered as a pleisomorphic feature in Arecoideae since the modern species, according to floral morphology, have the lowest chromosome number (2n=28 and 2n=30). The three Euterpe species also have the same type of interphase nuclei, classified as semi-reticulate. The species differed on karyotypic formulas, on localization of secondary constriction and genome size. The data suggest that the main forces driving Euterpe karyotype evolution were structural rearrangements, such as inversions and translocations that alter chromosome morphology, and either deletion or amplification that led to changes in chromosome size.
C-value, interphase nucleus, chromosomal evolution, flow cytometry, Açaí palm
Euterpe (Martius, 1823) (Arecaceae-Arecoideae), is composed of seven species distributed from Central to South America (
Cytogenetic data are critical for germplasm manipulation for such programs, especially when the use of interspecific hybrids is considered as a strategy to increase the variability and to incorporate alleles of interest (Bovi 1987). However, only the chromosome number of E. oleracea and E. edulis (2n=36) was reported in
Determination of genome size in plants has been recognized as a significant parameter for genomic characterization and may assist in evolutionary studies (
Therefore, the aims of this study were to compare karyotype, interphase nucleus pattern and genome size of E. edulis, E. oleracea and E. precatoria and discuss the karyotypic evolution within the genus.
The Açaí Palm Germplasm Bank (Banco de Germoplasma de Açaizeiro - BAG-Açaí), from Embrapa Amazônia Oriental in Belém-PA, Brazil, provided seeds from five specimens of E. oleracea and E. precatoria. The company Infrater Engenharia LTDA, headquartered in Ipatinga-MG, donated seeds from five specimens of E. edulis.
Roots originating from germinated seeds were pre-treated with 2 mM 8-hydroxyquinoline for 7 h at 4 °C. Slides were prepared by the squashing technique following cell wall digestion with pectinase/cellulase (100/200U) solution at 37 °C for 1.5 h. Staining was performed with 1% propionic carmine for the analysis of the mitotic metaphases and 5% Giemsa for the evaluation of the interphase nuclei. The images were acquired in a bright-field microscope (Leica DMLS) equipped with a digital camera (Nikon Digital Sight DS-Fi1).
The short and long arms (SA and LA, respectively) of chromosomes were measured using the IMAGE TOOL 3.00 program from UTHSCA (University of Texas Health Science Center in San Antonio). The mean lengths of SA and LA of each chromosome were obtained from measurement of five different metaphases from each species and were used to prepare the ideograms. The chromosome total length (TL = SA + LA), the haploid complement total length (HCTL = ∑Lti), the centromeric index (CI=[SA/(SA+LA)]×100) were calculated. The chromosomes were classified based on their centromere position according to
The nuclear DNA amount was estimated by flow cytometry using leaf tissue from three specimens per species. Each sample contained 20-30 mg of young leaves of the target species mixed with young leaves of Vicia faba L. cv. Inovec the internal reference standard with 1C=13.33 pg (
The HCTL and nuclear DNA amount data were submitted to analysis of variance and the means compared by the Tukey’s test at 5% probability using the SISVAR statistical program.
E. edulis, E. oleracea and E. precatoria have the same chromosome number (2n=36), similar chromosome sizes and differ regarding chromosome morphology (Fig.
Mitotic metaphases, karyograms and idiogram of Euterpe species with 2n=36 chromosomes. Euterpe edulis (A–B), E. oleracea (C-D) and E. precatoria (E–F). Arrows indicate secondary constrictions. Semi-reticulate interphase nuclei of E. edulis (G), E. oleracea (H) and E. precatoria (I). Bar: 10 µm.
C-value, haploid complement total length (HCTL), karyotype formula and asymmetry indexes (
Species | C-value (pg) | HCTL (µm) | Karyotype formula | A1 | A2 |
---|---|---|---|---|---|
E. edulis | 4.09 a | 49.60a | 12M + 3SM + 3A | 0.327 | 0.329 |
E. oleracea | 4.22 a | 51.30a | 14M + 4SM | 0.259 | 0.327 |
E. precatoria | 4.71 b | 59.39b | 11M + 6SM + 1A | 0.346 | 0.315 |
The chromosome pairs from 1 to 12 of E. edulis and E. oleracea are quite similar morphologically, and eight have the same classification, seven metacentric and one submetacentric. The same pairs are quite different in E. precatoria, which has the highest number of submetacentric chromosomes and one acrocentric pair, the largest and only pair of chromosomes with that morphology (Fig.
The chromosome pairs from 13 to 18, except 17, are all metacentric in E. oleracea and E. precatoria. The same pairs are different in E. edulis, with two pairs of acrocentric chromosomes (15 and 18) and one submetacentric chromosome (13). Chromosome pair 17 is the only one in the complements that differs regarding centromere position in all three species; it is metacentric in E. oleracea, submetacentric in E. precatoria and acrocentric in E. edulis (Fig.
One pair of chromosomes bears one secondary constriction in all three species. It is located on the long arm of pair seven (submetacentric) in E. edulis, in the short arm of pair two (metacentric) in E. oleracea and on the long arm of pair two (submetacentric) in E. precatoria (Fig.
E. precatoria showed HCTL and DNA content significantly higher than that of E. edulis and E. oleracea (Table
Interphase nuclei were quite similar, classified as semi-reticulate due the formation of strongly pigmented chromatin structures with irregular contours (Fig.
The chromosome number of E. edulis and E. oleracea, 2n=36, was also reported by
The analyzed karyotypes showed differences in centromere and secondary constriction position. The chromosomes may differ in terms of centromere position, according to
Most karyotype studies on palm trees do not include data on the number and location of secondary constrictions. The study performed by
The evolutionary direction of karyological changes was shown to be from reticulate to areticulate interphase nuclei when comparing the systematic classification of some Arecaceae subfamilies, mainly based on plant morphological characteristics, with the characterization based on the interphase nuclei and karyotypes (
Nuclear DNA quantification, when combined with interphase nucleus characterization and karyological data, may enable differentiation because it allows for the detection of small differences in the DNA amount between species. Those differences make it possible to infer chromosome rearrangements that may be too small to affect the physical structure of the chromosomes. Furthermore, according to
The comparison among the three species with respect to the nuclear DNA amount and total length of the haploid complement showed that E. precatoria has a larger genome than E. edulis and E. oleracea. Considering that they showed similar inner variation in chromosome size, the difference in DNA amount can be better explained by increase or decrease of size, by amplification or deletion, respectively, involving most of chromosomes.
Differences in genome size and chromosome morphology among the three Euterpe species revealed that structural rearrangements were the main force driving karyotype evolution in the genus. Higher resolution techniques, like chromosome banding and molecular hybridization (FISH) should be used to unravel the mechanisms involved.
The authors would like to thank Brazilian Agencies Conselho Nacional de Pesquisa e Desentolvimento (CNPq) and Coordenação de Pessoal de Nível Superior (CAPES) for granting the scholarship to L.C.O.; Embrapa Amazônia Oriental for funding the project; Infrater Engenharia LTDA for providing plant material; and to the Laboratory of Plant Tissue Culture (Universidade Federal de Lavras - UFLA) for the support on flow cytometry analyses.