Research Article |
Corresponding author: Sumalee Phimphan ( joodoof@gmail.com ) Academic editor: Natalia Golub
© 2021 Weera Thongnetr, Surachest Aiumsumang, Rodjarin Kongkaew, Alonglod Tanomtong, Chatmongkon Suwannapoom, Sumalee Phimphan.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Thongnetr W, Aiumsumang S, Kongkaew R, Tanomtong A, Suwannapoom C, Phimphan S (2021) Cytogenetic characterisation and chromosomal mapping of microsatellite and telomeric repeats in two gecko species (Reptilia, Gekkonidae) from Thailand. Comparative Cytogenetics 15(1): 41-52. https://doi.org/10.3897/CompCytogen.v15.i1.58208
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Studies of chromosomes of Cyrtodactylus jarujini Ulber, 1993 and C. doisuthep Kunya et al., 2014 to compare microsatellite and TTAGGG sequences by classical and molecular techniques were conducted in Thailand. Karyological typing from a conventional staining technique of C. jarujini and C. doisuthep showed diploid chromosome numbers of 40 and 34 while the Fundamental Numbers (NF) were 56 in both species. In addition, we created the chromosome formula of the chromosomes of C. jarujini showing that 2n (40) = Lsm1 + Lsm2 + Lt3 + Mm1 + Mt4 + Sm2 + Sa2 + St5 while that of C. doisuthep was 2n (34) = Lsm3 + Lm2 + Lt3 + Mm1 + Mt2 + Sm4 + Sa1 + St1. Ag-NOR staining revealed NOR-bearing chromosomes in chromosome pairs 13 and 14 in C. jarujini, and in chromosome pairs 9 and 13 in C. doisuthep. This molecular study used the FISH technique, as well as microsatellite probes including (A)20, (TA)15, (CGG)10, (CGG)10, (GAA)10, (TA)15 and TTAGGG repeats. The signals showed that the different patterns in each chromosome of the Gekkonids depended on probe types. TTAGGG repeats showed high distribution on centromere and telomere regions, while (A)20, (TA)15, (CGG)10, (CGG)10, (GAA)10 and (TA)15 bearing dispersed over the whole genomes including chromosomes and some had strong signals on only a pair of homologous chromosomes. These results suggest that the genetic linkages have been highly differentiated between the two species.
Ag-NOR, Cyrtodactylus doisuthep, Cyrtodactylus jarujini, FISH microsatellite, karyotype
Bent-toed geckos (genus Cyrtodactylus Gray, 1827) in Thailand have been classified into approximately 24 species (
The C. jarujini specimen (A), metaphase chromosome plate and karyotypes (A–G) by conventional technique, (D–H) by Ag-NOR banding technique. The C. doisuthep specimen (B), metaphase chromosome plate and karyotypes (E–I) by conventional technique, (F–J) by Ag-NOR banding technique. Arrows indicated Ag-NORs regions. Scale Bar: 5 µm.
Only 13% of gekkonid species have been karyotyped (
The samples of C. jarujini and C. doisuthep were collected from the Phu Wua, Ban Phaeng District, Nakhonphanom Province and Doi Suthep-Pui Range, Mueang District, Chiang Mai Province, Thailand, (permission from an ethical committee ID U1-04498-2559). Chromosomes were directly prepared in vivo (
The diploid numbers in C. jarujini and C. doisuthep, were 40 and 34, respectively (Fig.
The karyotype of C. jarujini consists of two large metacentric, four large submetacentric, six large telocentric, two medium metacentric, eight medium telocentric, four small metacentric, four small acrocentric and ten small telocentric chromosomes. The karyotype formula for C. jarujini is as follows: 2n (40) = Lm2 + Lsm4 + Lt6 + Mm2 + Mt8 + Sm4 + Sa4 + St10 or 2n (40) = 8m + 4sm + 4a + 24t. The karyotype of C. doisuthep comprises four large metacentric, six large submetacentric, six large telocentric, two medium metacentric, four medium telocentric, eight small metacentric, two small acrocentric and two small telocentric chromosomes. The karyotype formula for C. doisuthep is as follows: 2n (34) = Lm4 + Lsm6 + Lt6 + Mm2 +Mt4 + Sm8 + Sa2 + St2 or 2n (34) = 14m + 6sm + 2a + 12t.
This technique highlighted active NORs on pairs 13 and 14 of C. jarujini (Fig.
Microsatellites (A)20, (TA)15, (CAG)10, (CGG)10, (GAA)10 and (TA)15 abundantly distributed in some chromosomes, usually in telomeric regions of both species studied. FISH with the telomeric probe TTAGGG revealed hybridization signals on each telomere of all chromosomes (Fig.
The species in the Cyrtodactylus exhibited a variable chromosome number, ranging from 34 to 42, however, the most frequent numbers were 40 and 42. The present study showed that the chromosome numbers of C. jarujini and C. doisuthep were 40 and 34, respectively. The fundamental number was 56 in both species. These results showed difference and accordance with others Cyrtodactylus that have been reported (Table
Karyotype reviews in the genera Cyrtodactylus, Gekko Laurenti, 1768 and Hemidactylus Goldfuss, 1820 (Gekkonidae, Squamata).
Species | 2n | NF | Karyotype formula | NORs | Location | Reference |
Cyrtodactylus consobrinus (Peters, 1871) | 48 | 50 | 2bi-arm+46t | – | Malaysia |
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C. doisuthep Kunya et al., 2014 | 34 | 56 | 14m+6sm+2a+12t | P9, 13 | Thailand | Present study |
C. interdigitalis Ulber, 1993 | 42 | 52 | 4m+2sm+4a+32t | P12 | Thailand |
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C. jarujini Ulber, 1993 | 40 | 56 | 8m+4sm+4a+24t | P13, 14 | Thailand | Present study |
C. kunyai Pauwels et al., 2014 | 40 | 52 | 8m+4sm+6a+22t | P12 | Thailand |
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C. pubisulcus Inger, 1958 | 42 | 44 | 2bi-arm+40t | – | Malaysia |
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C. saiyok Panitvong, 2014 | 42 | 42 | 42t | P15 | Thailand |
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Gekko chinensis Gray 1842 | 40 | 46 | 6bi-armed+34uni-armed | – | China |
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G. gecko (Linnaeus, 1758) | 38 | 50 | 12bi-armed+26uni-armed | – | – |
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38 | 50 | Lm2+Lsm4+Lt4+Mt6+Sm4+Sa2+St16 | P4 | Thailand |
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G. hokouensis Pope, 1928 | 38 | 56 | 4m+6sm+20t+8bi-armed | P(L)19 | China | Chen et al. (1986) |
G. monarchus (Schlegel, 1836) | 38 | 46 | – | – | Malaysia |
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G. petricolus Taylor, 1962 | 38 | 54 | – | – | – |
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G. shibatai Toda et al., 2008 | 38 | 58 | 4m+8sm+18t+8bi-armed | P(L)19 | Japan |
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G. tawaensis Okada, 1956 | 38 | 58 | 4m+8sm+18t+8bi-armed | P(L)19 | Japan |
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G. taylori Grossmann et Ulber, 1990 | 42 | – | – | – | Thailand |
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G. vertebralis Toda et al., 2008 | 38 | 62 | 4m+14sm+14t+6bi-armed | P(L)19 | Japan |
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Hemidactylus brookii Gray, 1854 | 40 | 44 | 4bi-armed+36t | – | – |
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H. flaviviridis Rüppell, 1835 | 40 | 60 | 20bi-armed+20t | – | – |
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46 | 46 | 46t | – | – |
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40 | 52 | 12bi-armed+28t | – | – |
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H. frenatus Schlegel, 1836 | 46 | 46 | 46t | – | – |
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40 | 54 | 14bi-armed+26t | P3 | – |
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40 | 46 | 6bi-armed+34t | – | – |
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H. mabouia (Moreau de Jonnès, 1818) | 42 | 56 | 14bi-armed+28t | – | – |
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42 | 54 | 12bi-armed+30t | – | – |
Nucleolus organiser regions (NORs) are chromosome sites which contain the 18S and 28S ribosomal RNA genes. If these regions were active during the interphase prior to mitosis, they can be detected by silver nitrate staining (
The NORs in both species of genus Cyrtodactylus exhibited at the telomeric region on the long arm and short arm and are similar to the previous reports of the gekkonids for the Gekkonidae family by
Microsatellites or simple sequence repeats (SSRs) are oligonucleotides of 1–6 base pairs in length, forming excessive tandem repeats of usually 4 to 40 units (
In this study, the comparison of the cytogenetic maps of two Cyrtodactylus species (C. jarujini and C. doisuthep) enabled us to delineate the process of chromosomal re-organisation in this group. This is the first report in Thailand for the study of cytogenetics of both species. Therefore, the cytogenetic data obtained can be used to benefit cytotaxonomy and the study of evolution of geckos, as well as being an essential prerequisite for future genome projects of gecko groups.
This research project was financially supported by Mahasarakham University, Phetchabun Rajabhat University and The Unit of Excellence 2020 on Biodiversity and Natural Resources Management, University of Phayao (UoE63005).