Research Article |
Corresponding author: Viktor V. Bolshakov ( victorb@ibiw.ru ) Academic editor: Igor Sharakhov
© 2021 Viktor V. Bolshakov, Alexander A. Prokin.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Bolshakov VV, Prokin AA (2021) Karyotype and COI sequences of Chironomus sokolovae Istomina, Kiknadze et Siirin, 1999 (Diptera,Chironomidae) from the bay of Orkhon River, Mongolia. Comparative Cytogenetics 15(2): 149-157. https://doi.org/10.3897/CompCytogen.v15i2.66549
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Chironomus sokolovae Istomina, Kiknadze et Siirin, 1999 (Diptera, Chironomidae) is recorded from Mongolia for the first time. Eleven banding sequences determined in the Mongolian population were previously known from Altai and Yenisei populations: sokA1, sokB1, sokB2, sokC1, sokC2, sokD1, sokD2, sokE1, sokF1, sokF2 and sokG1. The additional B-chromosomes are absent. DNA-barcoding of COI gene was carried out for this species for the first time. The phylogenetic tree estimated by Bayesian inference showed a high similarity of the studied species with Ch. acutiventris Wülker, Ryser et Scholl, 1983 from the Chironomus obtusidens-group. The estimated genetic distance K2P between Ch. sokolovae and Ch. acutiventris is much lower (0.38%) than the commonly accepted threshold of 3% for species of genus Chironomus Meigen, 1803. Our results show that the accepted cytogenetic criteria of species level in the genus Chironomus are more in accordance with morphological ones of the same level, than with molecular-genetic criteria accepted for species COI genetic distance.
Chironomidae, Chironomus sokolovae, COI, Diptera, DNA-barcode, karyotype, Mongolia
At present time, nine species of Chironomus Meigen, 1803 identified by imago (
The species Ch. sokolovae belongs to Chironomus obtusidens-group including six species: Ch. acutiventris Wülker, Ryser et Scholl, 1983; Chironomus bavaricus Wülker, Ryser et Scholl, 1983; Ch. obtusidens Goethebuer, 1937; Ch. arcustylus Siirin, 2002; Ch. heterodentatus Konstantinov, 1956; Ch. sokolovae Istomina, Kiknadze et Siirin, 1999 (
The known range of the species includes the Altai Krai, Altai Republic, and the Tyva Republic in Russia (
The karyotype and DNA barcoding of COI gene of the Ch. sokolovae from the Orkhon River (Mongolia) are described in this publication with the aim of clarifying the species position within the Ch. obtusidens-group.
Two larvae were collected from the bay of the Orkhon River upstream of the reservoir: 47°10.734'N,102°47.384'E, in September 2017. Depth 0.5 m, bottom – silty sand. Temperature 20.0 °C, pH 7.2, EC 172 mkSm/sm, TDS = 98 mg/l. For all analyses larvae were fixed in ethanol (95%). Two fourth instar larvae were used for karyotype analysis by the ethanol-orcein technique (
One larva which was studied karyologically was taken for the total DNA extraction using «M-sorb-OOM» (Sintol, Moscow) kit with magnet particles according to manufacturer’s protocol. For amplification of COI (cytochrome oxidase subunit I) we used primers LCO1490 (5’-GGTCAACAAATCATAAAGATATTGG-3’) and HCO2198 (5’-TAAACTTCAGGGTGACCAAAAAATCA -3’) (Evrogen, Moscow) (
For alignment of COI nucleotide sequences we used MUSCLE in the MEGA6 software (
In addition, the 27 COI sequences of the genus Chironomus from “GenBank” and “Barcode of Life Data Systems” (BOLD; http://www.boldsystems.org) were analyzed. Accession numbers of used sequences in GenBank and BOLD: Chironomus acutiventris Wülker, Ryser et Scholl 1983 (AF192200.1), Ch. annularius Meigen, 1818 (AF192189.1), Ch. aprilinus Meigen, 1830 (KC250746.1), Ch. balatonicus Devai, Wulker et Scholl, 1983 (JN016826.1), Ch. bernensis Wülker & Klötzli, 1973 (AF192188.1), Ch. borokensis Kerkis, Filippova, Schobanov, Gunderina et Kiknadze, 1988 (AB740261), Ch. cingulatus Meigen, 1830 (AF192191.1), Ch. commutatus Keyl, 1960 (AF192187.1), Ch. curabilis Belyanina, Sigareva et Loginova, 1990 (JN016810.1), Ch. dilutus Shobanov, Kiknadze et Butler, 1999 (KF278335.1), Ch. entis Shobanov, 1989 (KM571024.1), Ch. heterodentatus Konstantinov, 1956 (AF192199.1), Ch. heteropilicornis Wülker, 1996 (MK795772.1), Ch. luridus Strenzke, 1959 (AF192203.1), Ch. maturus Johannsen, 1908 (DQ648204.1), Ch. melanescens Keyl, 1961 (MG145351.1), Ch. nipponensis Tokunaga, 1940 (LC096172.1), Ch. novosibiricus Kiknadze, Siirin & Kerkis, 1993 (AF192197.1), Ch. nuditarsis Keyl, 1961 (KY225345.1), Ch. obtusidens Goetghebuer, 1921 (CHMNO207-15*); Ch. piger Strenzke, 1959 (AF192202.1), Ch. pilicornis Fabricius, 1787 (BSCHI736-17*), Ch. plumosus (Linnaeus, 1758) (KF278217.1), Ch. riparius Meigen, 1804 (KR756187.1), Ch. tentans Fabricius, 1805 (AF110157.1), Ch. tuvanicus Kiknadze, Siirin et Wülker, 1993 (AF192196.1), Ch. whitseli Sublette & Sublette, 1974 (KR683438.1). The COI sequence of Ptychoptera minuta Tonnoir, 1919 (KF297888) was used as outgroup in phylogenetic analysis.
The chromosome set of the species is 2n = 8. The cromosome arm combination is AB, CD, EF and G (the Chironomus “thummi” cytocomlex). The additional B-chromosomes are absent. The chromosomes AB and CD are metacentric, EF is submetacentric, and G is telocentric. The karyotype of Ch. sokolovae is similar to Ch. acutiventris, but differs by fixed inversions in arms B, C, D and F (
We found two different karyotypes (genotypic combinations) in both larvae from Mongolia: sokA1.1.B1.1.C1.2.D1.1.E1.1.F1.1.G1.1 and sokA1.1.B1.2.C1.2.D1.2.E1.1.F1.2.G1.1., which consist of 11 banding sequences out of 18 known for the karyofund of this species (
Banding sequences of Ch. sokolovae from the Orkhon River, Mongolia. Arrows indicate centromeric band, sokA1, sokB1 and etc. – genotypic combinations of banding sequences in chromosome arms, Br – Balbiani rings, N – nucleous, p – puffs. sokA1.1. – mapped according to picture 2.51.2 by
Arm A. One banding sequence sokA1 1a-e 9a-e 2d-3e 15e-a 3f-i 12c-10a 4a-8g 14i-13a 16a-c 2c-1f 16d-19f C.
Arm B. Two banding sequences: sokB2 was found in homozygous and heterozygous state with sokB1. Both banding sequences are still not mapped.
Arm C. Two banding sequences: sokC1 1a-4g 15e-14c 16e-17a 6hg 11d-12a 11c-8a 4h-6b 12b-14b 16d-a 7d-a 6f-c 17b-22g C, found in heterozygous state with sokC2 1a-4g 15e-c 11c-8a 4h-6b 12b-13f 12a-11d 6gh 17a-16e 14c-15b 14ab 16d-a 7d-a 6f-c 17b-22g C.
Arm D. Two banding sequences: sokD1 1a-2e 23b-21e 8d-10e 4a-8c 21d-16a 13d-15e 13c-11a 3g-2f 23c-24g C found in homozygous and heterozygous state with sokD2 1a-3g 11a-13c 15e-13d 16a-21d 8c-4a 10e-8d 21e-24g C.
Arm E. One banding sequence sokE1 1a-2b 10b-5a 3e-2c 4h-3f 10c-13g C.
Arm F. Two banding sequences: sokF1 1a-i 19b-18a 2a-9f 13dc 11a-13b 10d-a 17d-14a 19c-23f C found in homozygous and heterozygous state with sokF2 1a-i 19b-18a 2a-6e 14a-17d 10a-d 13b-11a 13cd 9f-7a 19c-23f C.
Arm G. One banding sequence sokG1 was found. Not mapped.
All 11 banding sequences found in Mongolian larvae were previously known for both the Enisey and the Altai populations of studied species (
Single nucleotide sequence of Ch. sokolovae for the F6.2 gene from the tissue-specific Balbiani rings locus (
Pairwise genetic distances between Ch. sokolovae and the members of the Ch. obtusidens group obtained by K2P model (
According to
Phylogenetic analysis using COI sequences showed groups of related species (Fig.
The Species Ch. sokolovae and Ch. acutiventris are similar in their karyotypes but differ in a few fixed inversions in arms B, C, D and F (
Material was sampled during the expedition of the hydrobiological team of the “Joint Russian-Mongolian Complex Biological Expedition of the Russian and Mongolian Academies of Sciences”. The work was realized according to the Russia state projects AAAA-A19-119102890013-3, AAAA-A18-118012690106-7, 121050500046-8 and 121051100109-1. The authors are grateful to A.S. Sazhnev and A.V. Krylov (IBIW RAS) for help in fieldwork and to E.A. Movergoz, A.A. Bobrov, B.A. Levin (IBIW RAS) and M.Kh. Karmokov (IEMT RAS) for their help and consultations during all stages of the investigation and manuscript preparation; D.D. Pavlov (IBIW RAS) for the linguistic corrections of the text. The authors thank the reviewers for their valuable suggestions.